Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02460 583 / 0 Pectin lyase-like superfamily protein (.1) AT1G56710 577 / 0 Pectin lyase-like superfamily protein (.1) AT1G48100 539 / 0 Pectin lyase-like superfamily protein (.1) AT4G01890 534 / 0 Pectin lyase-like superfamily protein (.1) AT5G14650 377 / 3e-127 Pectin lyase-like superfamily protein (.1) AT1G60590 378 / 2e-126 Pectin lyase-like superfamily protein (.1) AT1G10640 364 / 5e-121 Pectin lyase-like superfamily protein (.1) AT1G80170 343 / 6e-114 Pectin lyase-like superfamily protein (.1) AT1G70500 322 / 2e-105 Pectin lyase-like superfamily protein (.1) AT1G23460 322 / 3e-105 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G005000 [exp] 781 / 0 AT1G02460 561 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G115700 [exp] 638 / 0 AT1G02460 593 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G190600 [exp] 621 / 0 AT1G02460 582 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G152000 [exp] 551 / 0 AT1G48100 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G100500 [exp] 547 / 0 AT1G48100 653 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 388 / 9e-131 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.010G042100 [exp] 369 / 5e-123 AT1G60590 675 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G189200 [exp] 368 / 1e-122 AT1G60590 644 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 332 / 7e-110 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009994 [exp] 571 / 0 AT1G02460 606 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038059 [exp] 563 / 0 AT1G02460 542 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10037834 [exp] 518 / 0 AT1G48100 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017109 [exp] 514 / 2e-180 AT1G48100 647 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030886 [exp] 370 / 4e-123 AT1G10640 658 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030604 [exp] 370 / 5e-123 AT1G60590 665 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029140 [exp] 358 / 2e-118 AT1G60590 660 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10013025 [exp] 347 / 7e-115 AT1G10640 634 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10030602 [exp] 321 / 1e-104 AT1G23460 624 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 320 / 2e-104 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF00295 [poplar] [flax] Glyco_hydro_28 Glycosyl hydrolases family 28
Representative CDS sequence Show only first row Show all	>Potri.005G005500.1 pacid=42805420 polypeptide=Potri.005G005500.1.p locus=Potri.005G005500 ID=Potri.005G005500.1.v4.1 annot-version=v4.1 ATGGTAACCATGACATTGTCTAAAATTTTCCTTTTGGCTTTTTCTTTCTTCTCTCTCTTCTTCTTTACTTACACTGAAGGGAGAGTTCATGCCAAGAGTA GATCAAAACACTCGGACATTGTTTCCCACGTTTCACTACCTCCTGCTCCTGCTCCTCAGGCGCCTGTTAGTCCAAGTTATTATAAGGATTCTCCAAGTCC TAGTCCTAGTCCTAGCCCAATTCAAAGAATTGCAAGGGTTTACAATGTGCTATCTTTTGGTGCTGTTGGTGATGGTGTAACAGATGATACACAAGCATTC AAGATGGCTTGGGATACTGCTTGCCTGCAGAATGAATCAGCTATTCTACTTGCTCCTGATGATTATTCTTTTATGATACAGCCTACTATCTTTACAGGAC CTTGTAAAACTAGCCTCGTGTTTCAGATTGATGGAACTATAATGCCACCTGATGGACCTGAATCATGGCCTAGTAAGATGAACAAGAGACAATGGCTAGT GTTTTACAAGATCAATGGAATGTCAATGCAAGGAGGTGGTGTTATAGACGGGAGAGGAGAGAAGTGGTGGAATCTGCCATGCAAGCCTCACAAAGGGATT AATGGCACAACACTTCCTGGTCCTTGTGATAGCCCAGTTGCTATTAGGTTTTTCACGAGCTCCAATTTGACAGTCCACGGACTCAGAGTGAAGAACAGTC CCCAATTCCATTTCCGGTTTGATAACTGTCAAAATGTTATTGTACAAATGCTTAGCATCAAATCACCAGCTCAAAGCCCTAACACAGATGGGATTCACAT AGAGAACACATACAATGTCCAAATACATAACTCTGTTGTATCAAATGGTGATGACTGTGTATCAATTGGAGCTGGTTGTCATAATGTCGATATAAAGAAC ATTACCTGTGGTCCAAGCCATGGCATAAGCATTGGTAGTCTTGGAATCCGCAACTCGCGAGCATGTGTGTCGAACATAACAGTGACAGATTCAGTAATCA AGTATTCCGATAATGGTGTCCGAATTAAGACATGGCAAGGTGGATATGGTTCTGTGTCTAAAATCACATTCCACAACATTCACATGGAAACAGTTCGCAA TCCAATAATCATAGACCAGTATTACTGCCAAACCAGGAATTGCACTAACCAAACTAGTTCAGTTTACATTTCTGATATTTTGTACACAAACATTAAAGGT ACCTATGATATTAGGAGTCCACCTTTGCATTTGGCTTGCAGTGATTCAGTTCCATGCACCAACCTCAGGTTATCAGAAATTGAGTTGCTTCCTGCTCAAG GACAATTTATGGCAAATCCATTTTGCTGGAATGCTTATGGGGCAATGCAGAATCTTACCATTCCACCAGTTTCTTGCTTGTTGGATGGGATCCCACAATT CTTACCCCAGAACAATATTGATCAGTGTCAGAATAACTTGTATCAGACCCGTATGTAA
AA sequence Show only first row Show all	>Potri.005G005500.1 pacid=42805420 polypeptide=Potri.005G005500.1.p locus=Potri.005G005500 ID=Potri.005G005500.1.v4.1 annot-version=v4.1 MVTMTLSKIFLLAFSFFSLFFFTYTEGRVHAKSRSKHSDIVSHVSLPPAPAPQAPVSPSYYKDSPSPSPSPSPIQRIARVYNVLSFGAVGDGVTDDTQAF KMAWDTACLQNESAILLAPDDYSFMIQPTIFTGPCKTSLVFQIDGTIMPPDGPESWPSKMNKRQWLVFYKINGMSMQGGGVIDGRGEKWWNLPCKPHKGI NGTTLPGPCDSPVAIRFFTSSNLTVHGLRVKNSPQFHFRFDNCQNVIVQMLSIKSPAQSPNTDGIHIENTYNVQIHNSVVSNGDDCVSIGAGCHNVDIKN ITCGPSHGISIGSLGIRNSRACVSNITVTDSVIKYSDNGVRIKTWQGGYGSVSKITFHNIHMETVRNPIIIDQYYCQTRNCTNQTSSVYISDILYTNIKG TYDIRSPPLHLACSDSVPCTNLRLSEIELLPAQGQFMANPFCWNAYGAMQNLTIPPVSCLLDGIPQFLPQNNIDQCQNNLYQTRM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02460			Pectin lyase-like superfamily ...		Potri.005G005500 [exp]	0	1
AT1G63440		HMA5	heavy metal atpase 5 (.1)		Potri.003G204801 [exp]	1.73	0.8375
AT3G06520			agenet domain-containing prote...		Potri.010G149301 [exp]	3.74	0.7807
AT1G30820			CTP synthase family protein (....		Potri.001G073100 [exp]	13.26	0.8229
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G083200 [exp]	13.78	0.8265	PtrEXLB1,EXLB1.1
AT5G35110			unknown protein		Potri.018G113700 [exp]	15.87	0.7468
					Potri.012G115400 [exp]	16.52	0.7836
AT2G42560			late embryogenesis abundant do...		Potri.019G090300 [exp]	17.66	0.8230
AT3G03990			alpha/beta-Hydrolases superfam...		Potri.014G016500 [exp]	21.44	0.7290
					Potri.017G080900 [exp]	22.02	0.8165
AT5G66440			unknown protein		Potri.005G229800 [exp]	22.04	0.8009

Compare expression of checked genes

Potri.005G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.