Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49142 912 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 534 / 0 MEF22 mitochondrial editing factor 22 (.1) AT3G23330 521 / 5e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 507 / 3e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G30700 501 / 5e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G33990 499 / 5e-167 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 496 / 3e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 492 / 2e-164 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 492 / 2e-163 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 480 / 4e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G220300 [exp] 561 / 0 AT1G11290 559 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 532 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 531 / 2e-180 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 528 / 2e-179 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.016G128900 [exp] 523 / 4e-178 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 511 / 2e-174 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 513 / 1e-173 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 514 / 6e-173 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G322100 [exp] 505 / 2e-171 AT3G26782 897 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017446 [exp] 532 / 1e-179 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024876 [exp] 528 / 1e-177 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1) Lus10030053 [exp] 520 / 3e-176 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000706 [exp] 523 / 4e-176 AT3G12770 878 / 0.0 mitochondrial editing factor 22 (.1) Lus10033026 [exp] 508 / 2e-171 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 504 / 2e-170 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029344 [exp] 496 / 3e-168 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031989 [exp] 493 / 7e-166 AT3G26782 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 497 / 3e-165 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 491 / 2e-162 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.005G005700.1 pacid=42802631 polypeptide=Potri.005G005700.1.p locus=Potri.005G005700 ID=Potri.005G005700.1.v4.1 annot-version=v4.1 ATGAAAACAATTTCTTCTCTTTCCCGCCAATTTTCAACTGCTAAACAGACAAAACCCTTTTCTTTAACAACCCAAAAACCTCAACTTTCCCCAAAATTCA CAGCCCTAACAGAAGACTTGTGTAATAAAATTTTGGACGTAAACCCAGATGCCAAAACACTTAAAAAGCTCCATTCCAAGATTTTAATTGACCAAAACCT TCACCCAAACCCTTCACTTGGCATCAAATTAATGAGGGCTTATGCCGCTTGTGGTGAACCATGTTACACACGCCACATATTTGATGAAATTACTGACAAA AATGTTGTGTTCTTTAATGTCATGATTAGAAGCTATGTTAACAATGGTTTATACCAAGATGCTTTACTTGTTTTCAAAACCATGGCTAATCAGGGGTTTT ATCCTGATAATTATACTTATCCTTGTGTGTTAAAGGCGTGTTCGGTGTCTGGGAATTTGTGGGTTGGCTTGCAAATTCATGGTGCTGTTGTGAAACTTGG GCTTGATATGAATCTTTATATTGGGAATGGGTTAGTTTCCATGTATGGGAAATGTAAGTGGTTGGATGCGGCAAGGCGAGTTCTTGATGAGATGCCAGGG AGGGATATGGTTTCTTGGAATTCGATGGTTGCTGGGTATGCACAAAATGGGAGGTTTAATGATGCATTGAAACTTTGTAGGGAAATGGAGGATTTGAAGC TAAAACCTGATGCTGGCACAATGGGAAGTCTCTTGCCAGCTGTGACGAACACATCTTGTGATAATGTTTTGTATGTTAAGGACATGTTTGTGAAGCTGAA AGAAAAGAGTTTGATTTCTTGGAACGTGATGATAGCAGTGTATGTGAATAATGCAATGCCTAATGAAGCAGTGGACTTGTATTTGCAGATGCAAGTGCAT GGGGTTGAACCCGATGCTGTCTCTATTTCTAGTGTGCTTCCTGCTTGTGGGGACCTTTCAGCTGCGGTGTTAGGAAGACGAATCCATGAATATGTTGAAA GGAAGAAGCTTCGGCCAAATTTATTATTGGAGAATGCATTAATTGATATGTATGCAAAATGTGGATGCTTAAAGGAAGCAAGGGCAGTATTTGATCAAAT GATGTTTCGGGATGTTGTGTCATGGACTTCTATGATCTCTGCTTATGGCATGAGTGGCCAAGGTAAGGATGCTGTGGCTCTCTTTAAAAAGATGAGGGAC TCAGGTTTTACTCCAGATTGGATTGCTTTTGTTTCTGTTCTAGCAGCCTGCAGTCACGCAGGATTGGTTGACGAGGGGAGGTATTGCTTTAATCTAATGG CTGAATATGGGATAACTCCAGGGATAGAACACTATAATTGCATGGTAGATCTATTGGGACGTGCTGGGAAAATAGACGAGGCCTATCATTTGACCAGACA GATGCCAATGGAGCCTAACGAAAGAGTTTGGGGGTCTCTGTTGAGTGCTTGTCGGGTTTACTCTAACATGAATATTGCACTTTTGGCTGCTGACCACCTG TACCAGTTAGCTCCTGAACAGTCAGGGTATTATGTGTTGCTATCCAACATATATGCAAAGGCTGGAAGATGGCAAGATGTGGAAACGGTTAGGTCAATCA TGAACAGCAAGGGAATCAAAAAAATTCCAGGCAATAGCAATGTTGAGATCAACGATCATGTTTACACCTTTCTTGCTGGTGACCAGTCTCATACTCAATC AAAGGAGATCTACAAGGCGTTAGGTGTATTAGTTGGAAGAATGAAAGAATTAGGTTACATGCCTGAAACTGATTCTGCTCTTCACGATGTGGAAGAGGAG GACAAAGAATGCCATCTAGCAGTTCATAGTGAGAAGCTGGCAATTGTGTTTGCCATTCTGAATACAAAGCCTGGAAGCACAATCAGAATTACCAAGAATA TTCGTGTTTGTGGGGATTGCCATGTTGCTACCAAGCTTATATCCAAGATCGCTGAACGAGAGATCATCATTAGAGATACTCATCGTTTTCACCATTTTCG TGATGGGGTTTGCTCCTGTGGGGACTATTGGTAA
AA sequence Show only first row Show all	>Potri.005G005700.1 pacid=42802631 polypeptide=Potri.005G005700.1.p locus=Potri.005G005700 ID=Potri.005G005700.1.v4.1 annot-version=v4.1 MKTISSLSRQFSTAKQTKPFSLTTQKPQLSPKFTALTEDLCNKILDVNPDAKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDK NVVFFNVMIRSYVNNGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLDMNLYIGNGLVSMYGKCKWLDAARRVLDEMPG RDMVSWNSMVAGYAQNGRFNDALKLCREMEDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEAVDLYLQMQVH GVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRD SGFTPDWIAFVSVLAACSHAGLVDEGRYCFNLMAEYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSACRVYSNMNIALLAADHL YQLAPEQSGYYVLLSNIYAKAGRWQDVETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYMPETDSALHDVEEE DKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLISKIAEREIIIRDTHRFHHFRDGVCSCGDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49142			Tetratricopeptide repeat (TPR)...		Potri.005G005700 [exp]	0	1
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Potri.017G041000 [exp]	1.41	0.9844
AT3G59300			Pentatricopeptide repeat (PPR)...		Potri.002G230700 [exp]	5.91	0.9471
AT1G35530			DEAD/DEAH box RNA helicase fam...		Potri.013G110200 [exp]	7.93	0.8556
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.010G043500 [exp]	8.36	0.8971
					Potri.003G153400 [exp]	10.95	0.9363
					Potri.001G174000 [exp]	12.64	0.9400
					Potri.006G273732 [exp]	13.26	0.9381
					Potri.018G110525 [exp]	14.69	0.9279
AT5G24620			Pathogenesis-related thaumatin...		Potri.015G000800 [exp]	16.70	0.8355
AT3G49940	AS2	LBD38	LOB domain-containing protein ...		Potri.002G119400 [exp]	17.94	0.8696

Compare expression of checked genes

Potri.005G005700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.