Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56700 335 / 5e-118 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) AT1G23440 305 / 3e-106 Peptidase C15, pyroglutamyl peptidase I-like (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G005100 [exp] 409 / 3e-147 AT1G56700 344 / 1e-121 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001521 [exp] 334 / 3e-116 AT1G56700 312 / 2e-107 Peptidase C15, pyroglutamyl peptidase I-like (.1.2.3) Lus10029137 [exp] 276 / 9e-95 AT1G23440 311 / 8e-109 Peptidase C15, pyroglutamyl peptidase I-like (.1.2) Lus10013026 [exp] 272 / 4e-93 AT1G23440 309 / 6e-108 Peptidase C15, pyroglutamyl peptidase I-like (.1.2) Lus10031438 [exp] 244 / 2e-78 AT1G09390 406 / 4e-139 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0379 [poplar] [flax] PgaPase PF01470 [poplar] [flax] Peptidase_C15 Pyroglutamyl peptidase
Representative CDS sequence Show only first row Show all	>Potri.005G005800.5 pacid=42805070 polypeptide=Potri.005G005800.5.p locus=Potri.005G005800 ID=Potri.005G005800.5.v4.1 annot-version=v4.1 ATGGGGTCTGAAGGGCCTCCAGCTGTAACAATCCATGTGACTGGATTCAAGAAATTCCATGGAGTTGCTGAGAATCCAACTGAGACAATTGTTGGTAATC TAAAAGAGTACATGAAGAAGAAGGGCATGCCAAAAGGCGTGATTCTGGGGAGTTGCAGTGTTCTCGAGTCTGCAGGACAAGGAGCGGTTGCTCCACTTTA CCAAATATTTCAATCTTCCATAAACTCGAAGGATTCTGAATCCTCAAGTCCTGGAAGAATCATTTGGCTACACTTTGGGGTCAATAGTGGGGCAACAAGA TTTGCCATTGAGCATCAAGCTGTCAATGAAGCTACTTTTCGCTGTCCAGATGAGTTGGGATGGAAGCCACAGAAAGTACCCATCATTCCTTCAGATGGTG GAATTTCACGAGTTCGAGAGACCACTCTTCCCGTCCAGGAGCTCACAAAGATCTTGACAAAGAAAGGCTATGAGGTGATGACATCTGATGATGCAGGCCG ATTTGTATGCAATTATGTTTACTACCATTCACTTCGGTTCGCAGAGCAAAATGGGACAAAGTCTCTCTTTGTGCATGTACCTCTGTTCTTGACCATAGAT GAGGAGACGCAAATGCAATTTGCTGCTTCCTTGTTGGAGGTACTTGCTTCTTTGTATTAA
AA sequence Show only first row Show all	>Potri.005G005800.5 pacid=42805070 polypeptide=Potri.005G005800.5.p locus=Potri.005G005800 ID=Potri.005G005800.5.v4.1 annot-version=v4.1 MGSEGPPAVTIHVTGFKKFHGVAENPTETIVGNLKEYMKKKGMPKGVILGSCSVLESAGQGAVAPLYQIFQSSINSKDSESSSPGRIIWLHFGVNSGATR FAIEHQAVNEATFRCPDELGWKPQKVPIIPSDGGISRVRETTLPVQELTKILTKKGYEVMTSDDAGRFVCNYVYYHSLRFAEQNGTKSLFVHVPLFLTID EETQMQFAASLLEVLASLY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56700			Peptidase C15, pyroglutamyl pe...		Potri.005G005800 [exp]	0	1
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Potri.010G043500 [exp]	1.00	0.9031
AT4G16400			unknown protein		Potri.006G017900 [exp]	1.41	0.8920
AT2G33310	AUX_IAA	IAA13	auxin-induced protein 13 (.1.2...		Potri.008G172400 [exp]	2.23	0.8315	IAA12.1
AT2G01910		ATMAP65-6	Microtubule associated protein...		Potri.008G139700 [exp]	4.24	0.8469
AT5G46295			unknown protein		Potri.011G079900 [exp]	6.92	0.8315
AT1G11530		ATCXXS1	C-terminal cysteine residue is...		Potri.001G416500 [exp]	8.00	0.7864
AT5G18580		FASS2, TON2, GD...	GORDO, FASS 1, EMBRYO DEFECTIV...		Potri.008G215300 [exp]	10.00	0.7793
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.001G307200 [exp]	10.95	0.8024	Pt-MSACAD1.1,CADL10
					Potri.014G032100 [exp]	11.61	0.7918
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.018G083700 [exp]	12.48	0.7741

Compare expression of checked genes

Potri.005G005800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.