Plant FIBer expression Database

Potri.005G005866 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09420 134 / 3e-36 G6PD4 glucose-6-phosphate dehydrogenase 4 (.1.2)
AT5G35790 92 / 1e-21 G6PD1 glucose-6-phosphate dehydrogenase 1 (.1)
AT5G13110 89 / 2e-20 G6PD2 glucose-6-phosphate dehydrogenase 2 (.1)
AT1G24280 89 / 2e-20 G6PD3 glucose-6-phosphate dehydrogenase 3 (.1)
AT3G27300 58 / 8e-10 G6PD5 glucose-6-phosphate dehydrogenase 5 (.1.2.3)
AT5G40760 54 / 1e-08 G6PD6 glucose-6-phosphate dehydrogenase 6 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G005200
[exp]
228 / 2e-71 AT1G09420 815 / 0.0 glucose-6-phosphate dehydrogenase 4 (.1.2)
Potri.014G166800
[exp]
89 / 3e-20 AT5G35790 931 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1)
Potri.003G168000
[exp]
86 / 2e-19 AT5G13110 950 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1)
Potri.001G059900
[exp]
85 / 3e-19 AT5G13110 956 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1)
Potri.001G337400
[exp]
53 / 4e-08 AT5G40760 910 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1)
Potri.017G070200
[exp]
53 / 4e-08 AT5G40760 902 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012340
[exp]
86 / 2e-19 AT5G35790 705 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1)
Lus10006386
[exp]
86 / 3e-19 AT5G35790 904 / 0.0 glucose-6-phosphate dehydrogenase 1 (.1)
Lus10003134
[exp]
85 / 5e-19 AT5G13110 973 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1)
Lus10011340
[exp]
83 / 3e-18 AT5G13110 967 / 0.0 glucose-6-phosphate dehydrogenase 2 (.1)
Lus10032079
[exp]
56 / 8e-09 AT5G40760 873 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1)
Lus10014615
[exp]
52 / 9e-08 AT5G40760 905 / 0.0 glucose-6-phosphate dehydrogenase 6 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF00479 G6PD_N Glucose-6-phosphate dehydrogenase, NAD binding domain
Representative CDS sequence
>Potri.005G005866.2 pacid=42805016 polypeptide=Potri.005G005866.2.p locus=Potri.005G005866 ID=Potri.005G005866.2.v4.1 annot-version=v4.1
ATGTCACTTTTCTTTCCAACTCTATCAATACCCTCTTGGGATTCTTCAACTTCTAGACCCATTTCTCCATGTTCGAGTTCTCTCAAAGACCCTCCTTTTA
GCTTGCAGCTTATGACAAGGAATTTTGGAGGAGGAGGTGGTTTATGTAGAAGGTTTTGTGGGTTAAAGCTATGGATAACCCAGAGATTCAATATTTGGCA
AATGAATAGGAAGTCTGGACCTTTGAAGGAGTTCATGACTACAAAAAATCAAAATTTTCCCAATGATTCCACTGAAGAGTGTGTGCGTGGCAGTTTGTGT
ATTGAAAGTTTGTGTTTTGCTGTGATGATTACTACCAAAAGGGTGCGCACCTTGCCTTTGCCAAGTCATTACTTGAATTATCCGACTGAGGGTGGTAGAG
GACCTTCTCTCTGCATTGCAGTCATTGGAGCAACTGGTGAGCTAGCAAAGGGGGAAATTTTTCTAGCATTATTTGCTCTGTATTATAATGGATTTCTATC
TGAGGACGTCGGTATCTTTGGTTATTCAAGAAAGAATTTGACGGCTGAAGATCTGAGATCCATAATAGCTTTGACTTTGACTTGTCGCATTGATCACCAG
CAGAACTGTGGGGACAAATGGAGGCTTTCCTCTTAA
AA sequence
>Potri.005G005866.2 pacid=42805016 polypeptide=Potri.005G005866.2.p locus=Potri.005G005866 ID=Potri.005G005866.2.v4.1 annot-version=v4.1
MSLFFPTLSIPSWDSSTSRPISPCSSSLKDPPFSLQLMTRNFGGGGGLCRRFCGLKLWITQRFNIWQMNRKSGPLKEFMTTKNQNFPNDSTEECVRGSLC
IESLCFAVMITTKRVRTLPLPSHYLNYPTEGGRGPSLCIAVIGATGELAKGEIFLALFALYYNGFLSEDVGIFGYSRKNLTAEDLRSIIALTLTCRIDHQ
QNCGDKWRLSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09420 G6PD4 glucose-6-phosphate dehydrogen... Potri.005G005866
[exp]
0 1
AT2G26100 Galactosyltransferase family p... Potri.006G228900
[exp]
4.89 0.7260
AT1G76490 HMGR1, HMG1, At... 3-HYDROXY-3-METHYLGLUTARYL COA... Potri.005G257000
[exp]
5.19 0.7561 Pt-HMG1.2
AT5G62440 Protein of unknown function (D... Potri.013G021800
[exp]
6.00 0.7444
AT4G27220 NB-ARC domain-containing disea... Potri.005G062130
[exp]
13.26 0.7101
Potri.006G120650
[exp]
13.71 0.7447
AT5G43810 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10,... Potri.008G158800
[exp]
15.71 0.7013 AGO906,Pt-AGO1.2
AT4G27220 NB-ARC domain-containing disea... Potri.005G061860
[exp]
17.20 0.7333
AT2G29970 Double Clp-N motif-containing ... Potri.008G069100
[exp]
18.89 0.7404
AT1G78955 CAMS1 camelliol C synthase 1 (.1) Potri.001G049100
[exp]
28.93 0.7302
AT4G00430 PIP1;4, TMP-C, ... TRANSMEMBRANE PROTEIN C, PLASM... Potri.006G098100
[exp]
29.69 0.6786 Pt-MDPIP1.4

Potri.005G005866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.