Plant FIBer expression Database

Potri.005G006300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G005300
[exp]
44 / 2e-06 ND /
Flax homologues

No hit found
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF15699 NPR1_interact NPR1 interacting
Representative CDS sequence
>Potri.005G006300.1 pacid=42803187 polypeptide=Potri.005G006300.1.p locus=Potri.005G006300 ID=Potri.005G006300.1.v4.1 annot-version=v4.1
ATGGAGGAAGAAAGGAAAAACAAGCTGAGTACTTTTTCAGAAGAAGAAGAAAACGACGATGAGGACGAGAGAATTGAGAAGTTCTTCGCGATAATAAGAA
GGCTTAGAGATGCTCGCATGTATTCGAGAACCTGTTTGCGAGAACAGGAGGCATGTAAGATAGCAAAGAAGGCAAAGAAAGCCCACGCACCTGTATGGAC
TCCAAAGTTTCAACTGGAAGATTTTGAGGAGCCAGGGTTGGAATCCACTCGCATATCTCAACCAAGTTCCTCAAATAAGGAATGTGGAAAGGAGAAGAAA
GAAGAACTAGATCTGAACCTTACCTTGTATTGA
AA sequence
>Potri.005G006300.1 pacid=42803187 polypeptide=Potri.005G006300.1.p locus=Potri.005G006300 ID=Potri.005G006300.1.v4.1 annot-version=v4.1
MEEERKNKLSTFSEEEENDDEDERIEKFFAIIRRLRDARMYSRTCLREQEACKIAKKAKKAHAPVWTPKFQLEDFEEPGLESTRISQPSSSNKECGKEKK
EELDLNLTLY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G006300
[exp]
0 1
AT5G06720 ATPA2 peroxidase 2 (.1) Potri.003G214700
[exp]
5.91 0.8379
AT5G17330 GAD1, GAD GLUTAMATE DECARBOXYLASE 1, glu... Potri.004G075300
[exp]
9.94 0.8560 GAD.3
AT4G00430 PIP1;4, TMP-C, ... TRANSMEMBRANE PROTEIN C, PLASM... Potri.006G097901
[exp]
14.49 0.8095
AT2G33420 Protein of unknown function (D... Potri.010G068000
[exp]
18.54 0.8496
AT4G19170 CCD4, NCED4 carotenoid cleavage dioxygenas... Potri.009G152200
[exp]
28.40 0.8467
AT3G15540 AUX_IAA MSG2, IAA19 MASSUGU 2, indole-3-acetic aci... Potri.003G056900
[exp]
31.04 0.8467 AUX22.3
AT5G48930 HCT hydroxycinnamoyl-CoA shikimate... Potri.005G028100
[exp]
37.94 0.7762
AT5G06720 ATPA2 peroxidase 2 (.1) Potri.003G214800
[exp]
38.01 0.8383 Pt-PRX1.16
AT4G19170 CCD4, NCED4 carotenoid cleavage dioxygenas... Potri.009G152300
[exp]
50.82 0.8359
AT5G25460 Protein of unknown function, D... Potri.003G059800
[exp]
52.74 0.7333

Potri.005G006300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.