Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 48 / 3e-07 transmembrane receptors;ATP binding (.1.2) AT1G75640 39 / 0.0005 Leucine-rich receptor-like protein kinase family protein (.1) AT1G69550 39 / 0.0005 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G65710 38 / 0.001 HSL2 HAESA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G009450 [exp] 204 / 2e-67 AT3G07040 89 / 4e-20 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G009101 [exp] 201 / 2e-64 AT3G07040 153 / 3e-40 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 189 / 1e-56 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134601 [exp] 88 / 4e-21 AT3G07040 443 / 2e-142 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 86 / 3e-20 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 86 / 3e-20 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 86 / 3e-20 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 77 / 2e-17 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 76 / 1e-16 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 64 / 1e-12 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10003094 [exp] 59 / 6e-11 AT3G07040 169 / 4e-46 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 58 / 2e-10 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 58 / 2e-10 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 57 / 2e-10 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10043373 [exp] 50 / 6e-08 AT3G07040 114 / 5e-29 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 50 / 8e-08 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10035976 [exp] 44 / 7e-06 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10041243 [exp] 44 / 8e-06 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10016684 [exp] 44 / 1e-05 AT1G55325 733 / 0.0 MACCHI-BOU 2, GRAND CENTRAL, RNA polymerase II transcription mediators (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G007750.1 pacid=42803083 polypeptide=Potri.005G007750.1.p locus=Potri.005G007750 ID=Potri.005G007750.1.v4.1 annot-version=v4.1 ATGATAAGGGAGCTTCCAGAGTCCATAAGGAAGCTCAAGTACTTGGAAATACTTGATTTGAAAGGGAGTCCTGTGTCTTCTTTGCCTGCTGGGATCACTC AATTGACATGTCTTTGCCAGCTCCGTAACTATCGACACAGTTTCCAGTCATCATCGTTCTTCCCTGACACTCATGGAATGAGAGTTCCATCAAGAATAGG AAGATTGACTAACCTGCAGACATTGGGAAGCGTTGAAGTGAATGAAGATTATGAGTTAGTCAGGGAGTTGGGAAAGCTAACTCAGTTGAGAAGGCTGGGC ATTTTAGCTAAGAGAAGAGCAGGGAATGGATCTCTGTTATACTTTGGACAGGTTGAAACACCTTACTGCTTTTTATCTTGTTTCACTAAACAACACTGA
AA sequence Show only first row Show all	>Potri.005G007750.1 pacid=42803083 polypeptide=Potri.005G007750.1.p locus=Potri.005G007750 ID=Potri.005G007750.1.v4.1 annot-version=v4.1 MIRELPESIRKLKYLEILDLKGSPVSSLPAGITQLTCLCQLRNYRHSFQSSSFFPDTHGMRVPSRIGRLTNLQTLGSVEVNEDYELVRELGKLTQLRRLG ILAKRRAGNGSLLYFGQVETPYCFLSCFTKQH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G007750 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G008666 [exp]	1.00	0.8930
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G009450 [exp]	2.44	0.8737
AT1G50180			NB-ARC domain-containing disea...		Potri.005G009201 [exp]	5.29	0.7953
AT4G25310			2-oxoglutarate (2OG) and Fe(II...		Potri.002G086550 [exp]	8.12	0.7481
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.003G022701 [exp]	9.79	0.7324
AT4G14615			unknown protein		Potri.008G160101 [exp]	12.00	0.7676
AT2G37680		PAT3, FRY1, FHY...	unknown protein		Potri.016G100600 [exp]	18.24	0.6465	FHY1.2
AT3G52155			Phosphoglycerate mutase family...		Potri.016G000900 [exp]	22.58	0.6935
AT1G50180			NB-ARC domain-containing disea...		Potri.005G008732 [exp]	23.76	0.7850
AT1G34780		ATAPRL4	APR-like 4 (.1.2)		Potri.002G097601 [exp]	33.88	0.6271

Compare expression of checked genes

Potri.005G007750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.