Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44930 194 / 1e-55 Plant protein of unknown function (DUF247) (.1) AT2G28580 183 / 2e-51 Plant protein of unknown function (DUF247) (.1) AT4G31980 168 / 6e-45 unknown protein AT3G50170 143 / 8e-37 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47200 141 / 1e-36 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2) AT3G47250 141 / 2e-36 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT1G67150 132 / 1e-33 Plant protein of unknown function (DUF247) (.1), Plant protein of unknown function (DUF247) (.2), Plant protein of unknown function (DUF247) (.3) AT2G36430 132 / 2e-33 Plant protein of unknown function (DUF247) (.1) AT3G50150 132 / 5e-33 Plant protein of unknown function (DUF247) (.1) AT3G50140 131 / 8e-33 Plant protein of unknown function (DUF247) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007500 [exp] 777 / 0 AT2G44930 151 / 1e-39 Plant protein of unknown function (DUF247) (.1) Potri.014G054100 [exp] 416 / 1e-140 AT2G44930 192 / 1e-54 Plant protein of unknown function (DUF247) (.1) Potri.005G008350 [exp] 376 / 4e-130 AT3G60470 115 / 5e-30 Plant protein of unknown function (DUF247) (.1) Potri.014G053900 [exp] 290 / 4e-93 AT2G44930 214 / 1e-63 Plant protein of unknown function (DUF247) (.1) Potri.014G053700 [exp] 278 / 1e-87 AT3G60470 164 / 1e-44 Plant protein of unknown function (DUF247) (.1) Potri.012G035100 [exp] 270 / 2e-85 AT2G44930 164 / 3e-45 Plant protein of unknown function (DUF247) (.1) Potri.012G011800 [exp] 270 / 3e-85 AT2G44930 173 / 1e-48 Plant protein of unknown function (DUF247) (.1) Potri.012G035001 [exp] 270 / 5e-85 AT2G44930 164 / 4e-45 Plant protein of unknown function (DUF247) (.1) Potri.017G024300 [exp] 232 / 1e-70 AT2G44930 214 / 9e-64 Plant protein of unknown function (DUF247) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009871 [exp] 156 / 4e-42 AT3G50120 246 / 4e-76 Plant protein of unknown function (DUF247) (.1) Lus10039780 [exp] 151 / 3e-40 AT3G50150 280 / 2e-89 Plant protein of unknown function (DUF247) (.1) Lus10039777 [exp] 147 / 4e-39 AT3G50150 272 / 3e-86 Plant protein of unknown function (DUF247) (.1) Lus10037762 [exp] 137 / 5e-35 AT3G50140 249 / 6e-77 Plant protein of unknown function (DUF247) (.1) Lus10004516 [exp] 136 / 8e-35 AT3G50150 234 / 2e-71 Plant protein of unknown function (DUF247) (.1) Lus10010065 [exp] 131 / 4e-33 AT3G50150 240 / 2e-73 Plant protein of unknown function (DUF247) (.1) Lus10027720 [exp] 128 / 6e-32 AT2G36430 486 / 4e-170 Plant protein of unknown function (DUF247) (.1) Lus10010064 [exp] 126 / 2e-31 AT3G50120 214 / 2e-63 Plant protein of unknown function (DUF247) (.1) Lus10038339 [exp] 126 / 3e-31 AT3G50160 230 / 8e-70 Plant protein of unknown function (DUF247) (.1) Lus10035568 [exp] 126 / 4e-31 AT2G36430 502 / 4e-176 Plant protein of unknown function (DUF247) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03140 [poplar] [flax] DUF247 Plant protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.005G008500.1 pacid=42803811 polypeptide=Potri.005G008500.1.p locus=Potri.005G008500 ID=Potri.005G008500.1.v4.1 annot-version=v4.1 ATGGGAGAAATTCGCTCACCATATTTTTCACTTGGCCAAAATTACTTCGGAGATAATTCTGATCATATTCATTCACCGTACATTTCATATGGCGGAGAGG ACTATCATGGAGACTATGCCGAAATTCATCCACCATATTCTTCAGCCGGAGACTACCGTGGAGATAATGCTGAGATTCATTCACCATATTCTTCAGCCGG AGACTACCTTGCAGATAATACTGAAATTCATTCTGAAGCATTGTTTCATCAACATATTTCTGGAAATTCATACAATGCACAACAATTTGTTAAGCATGGA AAAGTAACCCGTCGTGTTATAGGACCTTGGAATTATGAACAAGAGAGTGTTGTGTGCATCTACAGAGTTGGCAAGGCACTTCGCAAATCAAACGAAGCCA TGTACAGTCCTCAACAAATTTCTATAGGCCCTATTCACCACGGCAACGAAAATCTGCGTTTAATGGAAAGGAAAAAGTCTAAATACTATGGAGAGTTCTG GAAAGGCAGGGTGTCAAAGGAAAAGGAACTGGAAGGGGCTAAGAGCGAGTTTCGGGCTGCCCTGCGAGAAGATGAAAATACGATCCGCCAATGTTATGAA GATGATTCCCATGAAATTGAAAAATCTGAAGACTTTCTGGATCTGATTCTGTACGATGCTGTATTCATCTTCGAGCTATTCCTCAAGTACAGAGAAGGTA GAGACGAGTTTAAAAAAGATTCTATATTGAAACAACCATGGTTGAGGTTGGCGATTCGACGGGACTTGATTTTGTTTGAAAACCAGCTTCCATTCTTTAT TCTTGAGAAATTATATGAACTTCTTCCAGAAAACATTAAAGGAGAACACACGGATTTTAAAGCTCTTGCTTGTTCCTATTTTAAACTCCACCTTTCAAGT GAATTCTCTCCTCATGCAGCACCAATGCCAAAGCATTTCACTGATTTGGTAAGATCTTTACTATCCTTCACTCAAAATGCCAAGACTGTAGAACTAATCA AAAGCTTGCACAGTGCAACCAAGCTACGCCAAGCAGGAGTTAAGTTTAAGGTTCCACGAGAACGTAAATGCTTACTTGATGTGGATTTCCGTAGATTGGG AACGGAGTTTCACATACCACAGCTTGAGATAGACGGCAACACTGAACGTCTCTTCAGAAACCTTATGGCCATGGAGAAGCGTCTTTATCCAGGAGAAGAG TACGTCTGCCATTACATCAACCTATTGAGTATTCTTGTTGTCAAACCTAAAGATGCGAAACTCCTAATGGAAAATAAAATTGTAATTCACAATGACGAAG TTGCAGTGAGGGACCTGATTTACAGTCTTGCATCAGACACGATTGATCGCCATTCCTGTTATCACGACATCTTTACTTCGGTGGATGATTATTATAAAAG CTCCTGGGCCAAAAACCCCGCATACTTTATAGAGGAGTTTTTCGGGAATTTTTGGAAAGGTGTTGGAACGGTTTGTGCAGCTATCCTCCTCATCCTCACT TTGGTACAAACAATTTGTGAGCTCCTTGGCCTGCGCTAG
AA sequence Show only first row Show all	>Potri.005G008500.1 pacid=42803811 polypeptide=Potri.005G008500.1.p locus=Potri.005G008500 ID=Potri.005G008500.1.v4.1 annot-version=v4.1 MGEIRSPYFSLGQNYFGDNSDHIHSPYISYGGEDYHGDYAEIHPPYSSAGDYRGDNAEIHSPYSSAGDYLADNTEIHSEALFHQHISGNSYNAQQFVKHG KVTRRVIGPWNYEQESVVCIYRVGKALRKSNEAMYSPQQISIGPIHHGNENLRLMERKKSKYYGEFWKGRVSKEKELEGAKSEFRAALREDENTIRQCYE DDSHEIEKSEDFLDLILYDAVFIFELFLKYREGRDEFKKDSILKQPWLRLAIRRDLILFENQLPFFILEKLYELLPENIKGEHTDFKALACSYFKLHLSS EFSPHAAPMPKHFTDLVRSLLSFTQNAKTVELIKSLHSATKLRQAGVKFKVPRERKCLLDVDFRRLGTEFHIPQLEIDGNTERLFRNLMAMEKRLYPGEE YVCHYINLLSILVVKPKDAKLLMENKIVIHNDEVAVRDLIYSLASDTIDRHSCYHDIFTSVDDYYKSSWAKNPAYFIEEFFGNFWKGVGTVCAAILLILT LVQTICELLGLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44930			Plant protein of unknown funct...		Potri.005G008500 [exp]	0	1
AT3G60470			Plant protein of unknown funct...		Potri.005G008350 [exp]	1.00	0.9695
AT5G44130		FLA13	FASCICLIN-like arabinogalactan...		Potri.013G120600 [exp]	1.41	0.9666
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.006G275900 [exp]	22.71	0.9524
AT4G24140		BDG3	alpha/beta-Hydrolases superfam...		Potri.001G083400 [exp]	23.64	0.9399
AT2G38110		ATGPAT6, GPAT6	glycerol-3-phosphate acyltrans...		Potri.016G113100 [exp]	24.43	0.9535
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.009G133300 [exp]	25.80	0.9434	Pt-UF3.2
AT5G18020			SAUR-like auxin-responsive pro...		Potri.004G164700 [exp]	31.06	0.9522
AT5G45910			GDSL-like Lipase/Acylhydrolase...		Potri.004G054400 [exp]	33.67	0.9517
AT5G10480		PEP, PAS2	PEPINO, PASTICCINO 2, Protein-...		Potri.007G010900 [exp]	35.88	0.9490
AT5G04660		CYP77A4	"cytochrome P450, family 77, s...		Potri.008G025500 [exp]	37.04	0.9515

Compare expression of checked genes

Potri.005G008500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.