Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74190 310 / 2e-91 AtRLP15 receptor like protein 15 (.1) AT1G07390 303 / 2e-89 AtRLP1 receptor like protein 1 (.1.2.3) AT2G25470 293 / 6e-86 AtRLP21 receptor like protein 21 (.1) AT3G53240 292 / 1e-85 AtRLP45 receptor like protein 45 (.1) AT1G54470 287 / 2e-83 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT1G74170 282 / 2e-81 AtRLP13 receptor like protein 13 (.1) AT5G49290 269 / 3e-77 ATRLP56 receptor like protein 56 (.1) AT1G58190 265 / 1e-75 AtRLP9 receptor like protein 9 (.1.2) AT1G74180 250 / 3e-70 AtRLP14 receptor like protein 14 (.1) AT4G04220 215 / 7e-59 AtRLP46 receptor like protein 46 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G026914 [exp] 749 / 0 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3) Potri.005G009300 [exp] 748 / 0 AT1G07390 449 / 9e-140 receptor like protein 1 (.1.2.3) Potri.003G025100 [exp] 732 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1) Potri.003G026308 [exp] 725 / 0 AT1G74190 423 / 1e-130 receptor like protein 15 (.1) Potri.005G013200 [exp] 716 / 0 AT1G58190 453 / 1e-142 receptor like protein 9 (.1.2) Potri.003G013200 [exp] 713 / 0 AT2G25470 453 / 6e-144 receptor like protein 21 (.1) Potri.003G013700 [exp] 699 / 0 AT2G25470 366 / 2e-110 receptor like protein 21 (.1) Potri.003G028557 [exp] 695 / 0 AT1G07390 388 / 1e-117 receptor like protein 1 (.1.2.3) Potri.005G013800 [exp] 678 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027856 [exp] 377 / 1e-116 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10030068 [exp] 355 / 4e-109 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 278 / 9e-80 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10024721 [exp] 249 / 2e-70 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10032335 [exp] 249 / 3e-70 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10006948 [exp] 226 / 1e-62 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10002753 [exp] 217 / 8e-59 AT2G34930 389 / 2e-120 disease resistance family protein / LRR family protein (.1) Lus10004313 [exp] 213 / 5e-58 AT2G33060 335 / 5e-103 receptor like protein 27 (.1) Lus10003389 [exp] 210 / 2e-56 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10016384 [exp] 210 / 4e-56 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G008600.2 pacid=42802797 polypeptide=Potri.005G008600.2.p locus=Potri.005G008600 ID=Potri.005G008600.2.v4.1 annot-version=v4.1 TGTGGTCGTTGCTATGGGTGTTTGGAGGAAGAGAGAATTGGGCTCTTGGGGATCAAAGCTTTGATCAATCCACACAGCGTTTACGGGTATTTAGGCGACT GGACGGTCAATAAAGAGGATAATTGTTGTAAGTGGTCTGGGATCAAGTGTCATACAGCCACAAGGCGAGCGATCCAACTCTCTCTTTGGTATGCAAGGGA TTTGCGCTTGGGCGATTGGGTTCTCAACGCATCTTTGTTTTTTCCTTTTAGAGAATTGCAAAGTCTTGATTTGAGCTCTACTGGATTAGTTGGTTGCTTT GAGAATCAAGGTTTCGAAGTCCTATCATCAAAACTGGAGTTACTTAACCTAAGTGATAACCGATTTAATGATAAAAGCATTTTGTCATGTTTGACTGGGC TTTCCACTCTCAAGTCTTTGGATCTATCACACAATCAGTTGACAGGATCAGCTAGCTTCTATGGTTTTGAGATCAAATCATCACATTTGAGGAAACTTGA GAACCTTGACCTAAGCTATAATATGTTCAACGACAACATTTTATCATATCTGGGTGGATTTTCTTCTCTCAAGTCTTTAAATTTATCAGGCAATATGTTG TTAGGATCAACGACTGTCAATGGTTCAAGGAAGCTGGAATTACTGCATTCACTGGGAGTATTGCCATCCCTAAAGACCCTTTCTCTTAAGGATACTAATT TAAGCTGGACATCAATAAGTCAAGAGACTTTCTTCAACTCGACCACCCTTGAAGAATTGTATCTAGATCGTACTTCTCTCCCAATAAACTTTCTCCAGAA CATTGGAGCATTGCCTGCTCTTAAAGTTTTATCTGTTGGTGAATGTGACCTCCATGACACGCTGCCTGCTCAAGGTTTGTGTGAATTGAAGAATCTGGAG CAGTTAGATCTCTATGGAAATAATTTAGGAGGTTCACTCCCAGATTGTTTGGGAAACTTGTCATCTCTACAACTATTAGATGTTTCTATAAACCAATTTA CTGGAAATATTAACTCCAGTCCTCTTACCAACATCATATCCCTTGAATTCCGCTCACTATCAAATAACCTCTTTGAATTTCCCATTTTAATGAAACCTTT TATGAACCACTCAAGCCTCAAGTTCTTTGATACATTAACGTTTCTCAAGCTGTCAAACAATAATTTGGGTGGGAAATTACCTGACTCAGTGTTCAATTCT TCTGATTTTCCACCACCCTCTTGGAAAATATGGTTTGAATTGGATTTGAGTAACAATCAGTTTTCAGGCATGCTTCCAAGGTGGTTAGTCAATTCGACGC TACTCTGCGCCATTGATTTATCCAAAAACCATTTTAAGGGTCCAATTCCAAGTGACTTTTGTAAGCTTGAGGTGCTTGAATATTTGGACCTTTCTAAGAA CAAATTGTTTGGTTCTATACCATCTTGCTTCAATACACCACAAATAACACATGTTCATCTATCTGAAAATAGATTGAGTGGTCTATTAACATATGGATTT TATAACAGCTCTTCCCTGGTTACAATGGATCTCCGAGATAACAGCTTCACTGGTTCCATTCCAAATTGGATTGGTAATCTTTCATCATTAAGTGTTCTTC TTCTGAGGGCTAATCACTTTAATGGCGAGTTCCCTGTTTATTTATGTTGGTTAGAACAGTTAAGCATTTTGGATGTTTCACAAAACCAGCTCTCTGGTCC ACTACCCTCCTGTTTGGGCAATCTTACTTTCAAGGCAAGTTCCAAGAAAGCGTTAGTGGATCTCGGATTTGTTTTTCCATCAAGGTTCATAGAAAAAGCT TATTATGACACAATGGGTCCACCACTAGTGGATAGCATCAAAAACTTGGAAAGCATTTTTTGGCCCAACACTACAGAAGTGATAGAATTTACAACTAAAA ATATGTATTATGGTTACAAGGGGAAAATTCTCACCTACATGTCTGGTATTGATCTCTCCTGTAACAACTTCTTAGGAGCAATCCCTCAAGAATTGGGAAA CTTATGTGAGATACATGCATTGAACTTATCACACAACAATCTCGTTGGATCTATACCTGCAACGTTCGCAAACTTGAAGCAGATTGAGAGTTTGGATCTT TCTTACAACAACTTGAATGGTGCAATCCCTCAGCAACTTACTGAAATTACCACACTTGCAGTTTTTAGTGTGGCGCACAACAACTTGTCAGGTAAGACTC CCGAGAGAAAATATCAGTTTGGGACCTTCGATGAAAGCAGTTATGAAGGAAATCCTTTCTTATGTGGACCTCCATTGCAAAACAATTGTAATGAAGAAGA ATCACCATCGCAGCCAATGCCTAATGATGAACAAGAAGATGATGGTTTCATAGACATGGATTTTTTCTACCTCAATTTTGGTATATGCTACACAATTGTG GTGACGACGATTGCAGCAGTTCTCTACATCAATCCATATTGGCGACGCAGGTGGTTTTACTTCATCGAAGACTGCATAGATACTTGCAACTATTTTATGG TGGCTAGTTTTCGTAAGTTCTCCAACTTCATAAGGTGA
AA sequence Show only first row Show all	>Potri.005G008600.2 pacid=42802797 polypeptide=Potri.005G008600.2.p locus=Potri.005G008600 ID=Potri.005G008600.2.v4.1 annot-version=v4.1 CGRCYGCLEEERIGLLGIKALINPHSVYGYLGDWTVNKEDNCCKWSGIKCHTATRRAIQLSLWYARDLRLGDWVLNASLFFPFRELQSLDLSSTGLVGCF ENQGFEVLSSKLELLNLSDNRFNDKSILSCLTGLSTLKSLDLSHNQLTGSASFYGFEIKSSHLRKLENLDLSYNMFNDNILSYLGGFSSLKSLNLSGNML LGSTTVNGSRKLELLHSLGVLPSLKTLSLKDTNLSWTSISQETFFNSTTLEELYLDRTSLPINFLQNIGALPALKVLSVGECDLHDTLPAQGLCELKNLE QLDLYGNNLGGSLPDCLGNLSSLQLLDVSINQFTGNINSSPLTNIISLEFRSLSNNLFEFPILMKPFMNHSSLKFFDTLTFLKLSNNNLGGKLPDSVFNS SDFPPPSWKIWFELDLSNNQFSGMLPRWLVNSTLLCAIDLSKNHFKGPIPSDFCKLEVLEYLDLSKNKLFGSIPSCFNTPQITHVHLSENRLSGLLTYGF YNSSSLVTMDLRDNSFTGSIPNWIGNLSSLSVLLLRANHFNGEFPVYLCWLEQLSILDVSQNQLSGPLPSCLGNLTFKASSKKALVDLGFVFPSRFIEKA YYDTMGPPLVDSIKNLESIFWPNTTEVIEFTTKNMYYGYKGKILTYMSGIDLSCNNFLGAIPQELGNLCEIHALNLSHNNLVGSIPATFANLKQIESLDL SYNNLNGAIPQQLTEITTLAVFSVAHNNLSGKTPERKYQFGTFDESSYEGNPFLCGPPLQNNCNEEESPSQPMPNDEQEDDGFIDMDFFYLNFGICYTIV VTTIAAVLYINPYWRRRWFYFIEDCIDTCNYFMVASFRKFSNFIR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G008600 [exp]	0	1
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.003G026914 [exp]	3.46	0.8757
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.003G013156 [exp]	5.09	0.8393
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.010G158100 [exp]	6.92	0.7551
AT5G36930			Disease resistance protein (TI...		Potri.006G283400 [exp]	9.48	0.7773
AT5G36930			Disease resistance protein (TI...		Potri.006G282600 [exp]	11.83	0.7852
AT2G06050		AtOPR3, DDE1, O...	DELAYED DEHISCENCE 1, oxophyto...		Potri.004G212100 [exp]	13.49	0.7132
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Potri.001G281300 [exp]	16.09	0.6977
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.005G008800 [exp]	20.42	0.7980
					Potri.012G058050 [exp]	21.21	0.6668
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.017G097001 [exp]	23.91	0.7454

Compare expression of checked genes

Potri.005G008600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.