Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50180 66 / 1e-13 NB-ARC domain-containing disease resistance protein (.1) AT1G58400 61 / 7e-12 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58602 57 / 3e-10 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G58410 54 / 3e-09 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 53 / 4e-09 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G46730 52 / 9e-09 NB-ARC domain-containing disease resistance protein (.1) AT1G59124 52 / 1e-08 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 52 / 1e-08 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 52 / 1e-08 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 52 / 1e-08 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G009900 [exp] 238 / 5e-78 AT3G07040 285 / 1e-86 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 228 / 7e-71 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.011G031312 [exp] 181 / 2e-60 AT1G58602 53 / 5e-09 LRR and NB-ARC domains-containing disease resistance protein (.1.2) Potri.005G009201 [exp] 158 / 3e-49 AT1G50180 148 / 4e-40 NB-ARC domain-containing disease resistance protein (.1) Potri.002G216800 [exp] 84 / 1e-19 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134425 [exp] 83 / 2e-19 AT3G07040 347 / 6e-107 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 83 / 2e-19 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G138500 [exp] 82 / 5e-19 AT1G50180 617 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 81 / 9e-19 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014922 [exp] 77 / 2e-17 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 71 / 6e-15 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 66 / 1e-13 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 66 / 3e-13 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 65 / 4e-13 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 57 / 2e-10 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10003522 [exp] 54 / 6e-10 AT3G07040 74 / 3e-16 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 53 / 8e-09 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 52 / 9e-09 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 52 / 1e-08 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G008732.1 pacid=42804477 polypeptide=Potri.005G008732.1.p locus=Potri.005G008732 ID=Potri.005G008732.1.v4.1 annot-version=v4.1 ATGGCCATGATCGCAGTGCAGGTGGTGCTCGAGAAACTGGCTTCCTTTGTAGCAGAAGAAACACGGTTCTTGGGAGGAGTTAGTGGTGGAATCGTTGAAC TACAGGATGATTTGTATAGCATGAAATCTTTCCTTCAGGATGCGGAAGAAAGGAGTGAGAGTGATCAAGGACTGAGAGCCTGGGTCAAACAAGTGAGAGA TGTGGCTTATGATGCCGAGAACATTCTTGAAGAGTTCATGCTCCGGTTTGCTCCATCTCACGAGAGTGGTTTTATCCATTATCTTCGCAATTCATATCGT TCCATCCGTAAATTAAGTGCACGGCACCGGCTGGCAGTCCACTTAGAAAGCATTAAAGCAAGGCTGAAAGCCATTTGTTAG
AA sequence Show only first row Show all	>Potri.005G008732.1 pacid=42804477 polypeptide=Potri.005G008732.1.p locus=Potri.005G008732 ID=Potri.005G008732.1.v4.1 annot-version=v4.1 MAMIAVQVVLEKLASFVAEETRFLGGVSGGIVELQDDLYSMKSFLQDAEERSESDQGLRAWVKQVRDVAYDAENILEEFMLRFAPSHESGFIHYLRNSYR SIRKLSARHRLAVHLESIKARLKAIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50180			NB-ARC domain-containing disea...		Potri.005G008732 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G009900 [exp]	2.00	0.8499
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G007750 [exp]	23.76	0.7850
AT5G21280			hydroxyproline-rich glycoprote...		Potri.006G217900 [exp]	30.72	0.8194
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G009450 [exp]	52.63	0.7639
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G157000 [exp]	91.19	0.8054
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G231500 [exp]	112.53	0.7897
					Potri.010G008042 [exp]	138.84	0.7837
					Potri.010G007976 [exp]	146.43	0.7773
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.005G008800 [exp]	221.37	0.7683

Compare expression of checked genes

Potri.005G008732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.