Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58190 88 / 5e-18 AtRLP9 receptor like protein 9 (.1.2) AT1G74190 78 / 8e-15 AtRLP15 receptor like protein 15 (.1) AT2G25790 77 / 2e-14 Leucine-rich receptor-like protein kinase family protein (.1) AT2G25470 76 / 3e-14 AtRLP21 receptor like protein 21 (.1) AT1G74180 75 / 5e-14 AtRLP14 receptor like protein 14 (.1) AT5G49290 73 / 3e-13 ATRLP56 receptor like protein 56 (.1) AT1G54470 66 / 3e-11 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT3G53240 57 / 2e-08 AtRLP45 receptor like protein 45 (.1) AT5G62230 57 / 3e-08 ERL1 ERECTA-like 1 (.1.2) AT4G20270 56 / 4e-08 BAM3 BARELY ANY MERISTEM 3, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007900 [exp] 441 / 2e-142 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.005G009700 [exp] 429 / 5e-138 AT1G74190 453 / 4e-141 receptor like protein 15 (.1) Potri.003G026308 [exp] 418 / 1e-134 AT1G74190 423 / 1e-130 receptor like protein 15 (.1) Potri.003G026914 [exp] 416 / 5e-134 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3) Potri.005G011600 [exp] 416 / 4e-133 AT1G74190 439 / 1e-135 receptor like protein 15 (.1) Potri.003G028557 [exp] 411 / 1e-132 AT1G07390 388 / 1e-117 receptor like protein 1 (.1.2.3) Potri.003G013700 [exp] 386 / 5e-123 AT2G25470 366 / 2e-110 receptor like protein 21 (.1) Potri.017G018700 [exp] 372 / 5e-118 AT1G58190 481 / 1e-152 receptor like protein 9 (.1.2) Potri.005G009300 [exp] 371 / 9e-117 AT1G07390 449 / 9e-140 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027856 [exp] 106 / 8e-24 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10030068 [exp] 102 / 1e-22 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 98 / 3e-21 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10038392 [exp] 63 / 5e-10 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10016338 [exp] 60 / 3e-09 AT2G34930 387 / 3e-121 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 59 / 1e-08 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10026993 [exp] 58 / 1e-08 AT1G65380 759 / 0.0 clavata 2, Receptor Like Protein 10, Leucine-rich repeat (LRR) family protein (.1) Lus10020189 [exp] 57 / 2e-08 AT1G65380 760 / 0.0 clavata 2, Receptor Like Protein 10, Leucine-rich repeat (LRR) family protein (.1) Lus10008230 [exp] 57 / 2e-08 AT4G20140 466 / 3e-147 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10004313 [exp] 57 / 3e-08 AT2G33060 335 / 5e-103 receptor like protein 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G008901.1 pacid=42802634 polypeptide=Potri.005G008901.1.p locus=Potri.005G008901 ID=Potri.005G008901.1.v4.1 annot-version=v4.1 ATGATGGTGAAAAAAATGGGGGCTTGGATGTTGCTAGCGTTATTGACTTTGGTTGGCGAATGGTGTGGTAGTTATGGATGTTCGGAGGAAGAGAGAACTG GTCTCTTGGAGATCAAAGCTTTGATCGATCCAAATCACCTTTCCTTGGGAGATTGGGTGGACAGTAGTAATTGTTGTGAGTGGCCTGGGATCGAGTGTGA TAACACTACTAGACGAGTGATCCAACTCTCTCTTTTTGGAGCAAGGGATCAGAGTTTGGGGGATTGGGTTCTCAACGCATCTTTGTTCTTGCCTTTTAAG GAATTGCAAAGTCTTGATTTGAGTTCTAATGGATTAGTTGGTTGCTTTGAGAATCAAGGCTTCGAAGTCCAATCATCAAAACTGGAGGTACTTGATCTAA GTCAGAACCGATTTAATAATGATAAAAGCATTTTATCATGTTTGAGTGGGCTTTCCTCTCTCAAGTCTTTAGATTTATCAGACAATGGGTTGAAAGGATC AGGTTTCAAGGACTTGTCATCAAGGTTGAAAAAAGTGGAGAACCTTGACCTAAGTTGGAATCAATACAACGATAGCATTTTTTCATCTATAACTGGATTT TCATCTCTCAAGCATTTAGATCTGTCATTCAATCAGCTGACAGGATCTACTGGTATCAATAGTTTTCAACTCCAACCGGTGAGTCTGGGAAAGTTAGAGA ACCTTGACCTGAGTGACAATCAATTGAACAGTAGCATCTTATCAATTCTGAGTGGGCTTTCATCCCTCAAGTCTTTGAATCTATCAAATAATATGTTGAC AGGATCAGGTTTCAAAGTCTTGTCATCAAGGTTGAAAAAGCTGGAGAACCTTCATCTAAGTCGAAATCAGTGCAACGACAGCATTTTTTCATCTTTAAGT GGATTTTCATCTCTCAAGCATTTAGATCTGTCATTCAATCAGCTGACAGGATCTACTGGTATCAATAGTTTTCAACTCCACCCGGTGAGGCTGGGAAAGT TAGAGAACCTTGACCTGCGTGGCAATCAATTGAACAGTAGCATCTTATCAATTCTGAGTGGGCTTTCATCCCTCAAATCTTTGGATCTATCAAATAATAT GTTGACAGGATCAGGGACTTTCTTCAATTCGAGCACTCTTGAAGAATTGTATCTAGATTATACTTCTCTCCCATTAAACTTTCTCCCGAAAATCAGAGCA TTGCCAGCTCTTAAGGTCTTGTCTGTTAGTGATAGTAACCTCAATGGCACCCTGCCCACTCGAGGGACTTTTTTCAATTCGAGCACCCTTGAAGAATTGT ATCTAGATTATACTTCTCTCCCATTAAACTTTCTCCAGGACATCGGTGCATTGCCAGCTCTTAAGGTCTTGTCTGTTGGTGAATGTAACATCAATGACAC CCTACCCGCTCAAGGCTGGTGTGAATTGAAGAATCTGGAGCAATTAGATCTCTATGGAAATAATTTAGGAGGTTCACTCCCAGATTGTTTGGGAAACTTG TCATCTCTACAACTATTAGATGTTTATGAAAACTAG
AA sequence Show only first row Show all	>Potri.005G008901.1 pacid=42802634 polypeptide=Potri.005G008901.1.p locus=Potri.005G008901 ID=Potri.005G008901.1.v4.1 annot-version=v4.1 MMVKKMGAWMLLALLTLVGEWCGSYGCSEEERTGLLEIKALIDPNHLSLGDWVDSSNCCEWPGIECDNTTRRVIQLSLFGARDQSLGDWVLNASLFLPFK ELQSLDLSSNGLVGCFENQGFEVQSSKLEVLDLSQNRFNNDKSILSCLSGLSSLKSLDLSDNGLKGSGFKDLSSRLKKVENLDLSWNQYNDSIFSSITGF SSLKHLDLSFNQLTGSTGINSFQLQPVSLGKLENLDLSDNQLNSSILSILSGLSSLKSLNLSNNMLTGSGFKVLSSRLKKLENLHLSRNQCNDSIFSSLS GFSSLKHLDLSFNQLTGSTGINSFQLHPVRLGKLENLDLRGNQLNSSILSILSGLSSLKSLDLSNNMLTGSGTFFNSSTLEELYLDYTSLPLNFLPKIRA LPALKVLSVSDSNLNGTLPTRGTFFNSSTLEELYLDYTSLPLNFLQDIGALPALKVLSVGECNINDTLPAQGWCELKNLEQLDLYGNNLGGSLPDCLGNL SSLQLLDVYEN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G008901 [exp]	0	1
AT2G01340		At17.1	unknown protein		Potri.004G088200 [exp]	7.74	0.9529
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G179400 [exp]	10.19	0.9546
AT2G45600			alpha/beta-Hydrolases superfam...		Potri.001G466200 [exp]	14.69	0.8892
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G141125 [exp]	19.59	0.9483
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.017G010000 [exp]	20.04	0.9429
AT3G18670			Ankyrin repeat family protein ...		Potri.015G118600 [exp]	20.32	0.9369
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Potri.007G066700 [exp]	23.32	0.9365
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G034200 [exp]	23.95	0.9293
AT4G27290			S-locus lectin protein kinase ...		Potri.001G412700 [exp]	26.83	0.8866
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.013G112100 [exp]	27.38	0.9287

Compare expression of checked genes

Potri.005G008901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.