Plant FIBer expression Database

Potri.005G009001 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G096014
[exp]
92 / 5e-25 ND /
Potri.018G096021
[exp]
92 / 1e-22 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G009001.1 pacid=42804138 polypeptide=Potri.005G009001.1.p locus=Potri.005G009001 ID=Potri.005G009001.1.v4.1 annot-version=v4.1
ATGAAGGCGAACAGATCTGAGTCTGTGGGTGTCGCTTCGCTCTGGCTGTTAGAGCTGCGGTGGAGATGGGAGGCAGTTGACCGGTCGGCGTCGCTGGTTG
AAGGAGACGAAGAGGTTGCTGGTTGCTGCTGTTCGGCCGCCGCTGGGGGAAGCTTTGTCGCGTCTGTGCTGATGAGGGAGACCGTGGCCTGCGGCCGGTG
GAAGAGGGAAGATCTGTCAGCTGCGGGCTGGAAGGCGGTGTTCTCGGTGGCTGAGAGAAGCGCCGCTGGGAGGGGGAAGGTCTGGTGCGTGGGGGGTGTT
CGGATGTGTTGCTGGAAAAGAAAAATGGAGCTGCTGTCTTGGAGAAGGGGAGAGGTCGTGGCTGAGAGGGAGGCGGCGGTCTTGGTTTCCCAAGGAAGGG
GGAGGCTGGCCGGTTCTGATTTGTAG
AA sequence
>Potri.005G009001.1 pacid=42804138 polypeptide=Potri.005G009001.1.p locus=Potri.005G009001 ID=Potri.005G009001.1.v4.1 annot-version=v4.1
MKANRSESVGVASLWLLELRWRWEAVDRSASLVEGDEEVAGCCCSAAAGGSFVASVLMRETVACGRWKREDLSAAGWKAVFSVAERSAAGRGKVWCVGGV
RMCCWKRKMELLSWRRGEVVAEREAAVLVSQGRGRLAGSDL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G009001
[exp]
0 1
AT4G10790 UBX domain-containing protein ... Potri.001G085600
[exp]
1.73 0.9410
AT3G61370 Protein of unknown function (D... Potri.016G069200
[exp]
2.00 0.9427
AT2G19270 unknown protein Potri.006G075000
[exp]
3.46 0.9374
AT1G10580 Transducin/WD40 repeat-like su... Potri.008G172800
[exp]
4.24 0.9220
AT1G07360 C3HZnF MAC5A MOS4-associated complex subuni... Potri.009G041600
[exp]
4.47 0.9332
Potri.001G374901
[exp]
5.09 0.9175
AT2G44200 CBF1-interacting co-repressor ... Potri.006G000200
[exp]
5.29 0.9166
Potri.017G152420
[exp]
6.00 0.9193
AT1G55000 peptidoglycan-binding LysM dom... Potri.013G021600
[exp]
7.07 0.9217
AT1G09710 MYB Homeodomain-like superfamily p... Potri.002G106500
[exp]
7.48 0.9223

Potri.005G009001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.