Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 90 / 2e-20 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G27170 56 / 1e-08 transmembrane receptors;ATP binding (.1.2) AT3G46730 52 / 1e-07 NB-ARC domain-containing disease resistance protein (.1) AT1G50180 50 / 4e-07 NB-ARC domain-containing disease resistance protein (.1) AT1G59780 48 / 3e-06 NB-ARC domain-containing disease resistance protein (.1) AT1G58400 47 / 9e-06 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58602 46 / 1e-05 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G58807 46 / 2e-05 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G46710 45 / 2e-05 NB-ARC domain-containing disease resistance protein (.1) AT5G49660 45 / 2e-05 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G009101 [exp] 398 / 1e-139 AT3G07040 153 / 3e-40 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 388 / 1e-129 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G007750 [exp] 205 / 7e-68 AT3G07040 58 / 1e-10 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134601 [exp] 142 / 1e-38 AT3G07040 443 / 2e-142 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 140 / 4e-38 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 140 / 6e-38 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 140 / 9e-38 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134475 [exp] 139 / 2e-37 AT3G07040 413 / 1e-129 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 139 / 2e-37 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038983 [exp] 120 / 6e-31 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 119 / 1e-30 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 112 / 3e-28 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10003094 [exp] 105 / 4e-26 AT3G07040 169 / 4e-46 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 97 / 1e-22 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 94 / 9e-22 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 91 / 1e-20 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028075 [exp] 74 / 7e-15 AT3G07040 168 / 1e-43 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 74 / 1e-14 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 74 / 1e-14 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G009450.1 pacid=42804519 polypeptide=Potri.005G009450.1.p locus=Potri.005G009450 ID=Potri.005G009450.1.v4.1 annot-version=v4.1 ATGCGAGAAATCATTCAAATGAAATCCAGGGAAGAATCTTTTGTTATGATAGCAAACGGAACAAGAATCAGCAAGAATGAGAAAGTTCGGCGTCTATCAA TCCATGAGAACTCTGAGGAAGTACAATCAGATATGAGATTTCCTTATCTGTGGTCTTTTTTGTCATTTTCTTCACATCATTCTTTTGAGCATGGTTTTCG CAATTACAATCTGTTGAGAGTATTGAATTTAGATCGAGCTCCCCTTTCCAGCTTCCTACCTGAATTGATTGAACTGATTCATTTGAGATACTTAAGTTTG AGATGGACCATGATAAGGGAGCTTCCAGAGTCCATAAGGAAGCTCAAGTACTTGGAAATACTTGATTTGAAAGGGAGTCCTGTGTCTTCTTTGCCTGCTG GGATCACTCAATTGACATGTCTTTGCCAGCTCCGTAACTATCGACACAGTTTCCAGTCATCATCGTTCTTCCCTGACACTCATGGAATGAGAGTTCCATC AGGAATAGGAAGATTGACTAACCTGCAGACATTGGGAAGCGTTGAAGTGAAAGAAGATTATGAGTTAGTCAGGGAGTTGGGAAAGCTAACTCAGTTGAGA AGGCTGGGCATTTTAAAGCTAAGAGAAGAGCAGGGAATGGATCTCTGTTATACTTTGGACAGCTTTACCAGGATGGATAGCTTCACTCCAGTATATTTCC AAGCTAGTGCTTCAATAGTCTAA
AA sequence Show only first row Show all	>Potri.005G009450.1 pacid=42804519 polypeptide=Potri.005G009450.1.p locus=Potri.005G009450 ID=Potri.005G009450.1.v4.1 annot-version=v4.1 MREIIQMKSREESFVMIANGTRISKNEKVRRLSIHENSEEVQSDMRFPYLWSFLSFSSHHSFEHGFRNYNLLRVLNLDRAPLSSFLPELIELIHLRYLSL RWTMIRELPESIRKLKYLEILDLKGSPVSSLPAGITQLTCLCQLRNYRHSFQSSSFFPDTHGMRVPSGIGRLTNLQTLGSVEVKEDYELVRELGKLTQLR RLGILKLREEQGMDLCYTLDSFTRMDSFTPVYFQASASIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G009450 [exp]	0	1
AT1G50180			NB-ARC domain-containing disea...		Potri.005G009201 [exp]	1.41	0.8769
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G008666 [exp]	2.00	0.8764
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G007750 [exp]	2.44	0.8737
AT5G05800			unknown protein		Potri.005G153700 [exp]	21.65	0.7731
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.002G241900 [exp]	26.72	0.7138
AT4G31980			unknown protein		Potri.017G145100 [exp]	32.46	0.7329
AT1G50180			NB-ARC domain-containing disea...		Potri.005G008732 [exp]	52.63	0.7639
AT1G34380			5'-3' exonuclease family prote...		Potri.013G114400 [exp]	52.76	0.6843
AT2G19080			metaxin-related (.1)		Potri.018G145508 [exp]	53.06	0.6814
					Potri.002G214475 [exp]	55.42	0.7349

Compare expression of checked genes

Potri.005G009450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.