Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74190 453 / 4e-141 AtRLP15 receptor like protein 15 (.1) AT1G74170 451 / 7e-140 AtRLP13 receptor like protein 13 (.1) AT1G07390 441 / 4e-137 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74180 427 / 4e-131 AtRLP14 receptor like protein 14 (.1) AT3G53240 418 / 7e-129 AtRLP45 receptor like protein 45 (.1) AT1G58190 420 / 4e-128 AtRLP9 receptor like protein 9 (.1.2) AT2G25470 417 / 8e-128 AtRLP21 receptor like protein 21 (.1) AT5G49290 400 / 5e-122 ATRLP56 receptor like protein 56 (.1) AT1G54470 308 / 2e-88 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT5G44700 250 / 1e-67 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007900 [exp] 2295 / 0 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.005G011600 [exp] 2035 / 0 AT1G74190 439 / 1e-135 receptor like protein 15 (.1) Potri.005G007600 [exp] 1508 / 0 AT1G58190 439 / 2e-136 receptor like protein 9 (.1.2) Potri.017G018700 [exp] 1414 / 0 AT1G58190 481 / 1e-152 receptor like protein 9 (.1.2) Potri.005G013100 [exp] 1327 / 0 AT1G74190 452 / 6e-143 receptor like protein 15 (.1) Potri.005G013400 [exp] 1248 / 0 AT1G74190 412 / 4e-129 receptor like protein 15 (.1) Potri.005G013200 [exp] 974 / 0 AT1G58190 453 / 1e-142 receptor like protein 9 (.1.2) Potri.005G009300 [exp] 969 / 0 AT1G07390 449 / 9e-140 receptor like protein 1 (.1.2.3) Potri.005G006701 [exp] 946 / 0 AT1G74190 438 / 3e-136 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 452 / 1e-141 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 381 / 4e-114 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 287 / 4e-81 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10016384 [exp] 288 / 1e-80 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 271 / 2e-75 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10006948 [exp] 258 / 5e-72 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10026415 [exp] 260 / 2e-71 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10016342 [exp] 258 / 3e-71 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002742 [exp] 255 / 6e-70 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10039529 [exp] 254 / 1e-69 AT2G34930 427 / 1e-134 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G009700.2 pacid=42802935 polypeptide=Potri.005G009700.2.p locus=Potri.005G009700 ID=Potri.005G009700.2.v4.1 annot-version=v4.1 ATGATGATGAAAAAAATGGGGGCTTGGATGTTGCTAGCATTATTGACTTTGGTTGGCGACTGGTGTGGTCGTTGTTATGGGTGTTTGGAGGAAGAGAGAA TTGGTCTCTTAGAGATCAAGCCTTTGTTCGACCCAAACAGCATTTACATGAGAGATTGGGTGGAGTACAGTAGTAATTGTTGTGAGTGGTATGGCATCGA GTGTGATAACACTACAAGGCGAGTGATCCACCTCTCTCTTTGGGATGCAACGGATTTCCTCTTGGGGGATTGGGTTCTCAACGCATCTTTGTTTCTGCCT TTTAAGGAATTGCAAAGTCTTGATTTGAGTTTTAATGGATTAGTTGGTTGCTCTGAGAATGAGGGCTTCGAAGTCCTACCATCAAAACTGGAGGTACTTG ACCTAACTCGGAACCGATTTAATAATGATAAAGGCATTTTATCATGCTTCAATGGGATTTCCGCTCTCAAGTCTTTGGACCTGTCAGACAATCAGCTGAC AGGGTCAGGTCTCAAAGTCTTGTCATCAAGGTTGAAAAAGCTGGAGAACCTTCACCTGAGTGCCAATCAATGCAACGATAGCATTTTTTCATCTATAACT GGATTTTCATCTCTCAAGTCTTTGGATCTGTCATACAATGAGGTGACAGGGTCAGGTCTCAAAGTCTTGTCATCAAGGTTGCAAAAGCTGGAGAACCTTC ACCTAAGTGGGAATCAGTGCAACGATAGCATTTTTTCATCTATAACTGGGTTTTCATCTCTCAAGTCTTTGGACCTGTCAGACAATCAGGTGACAGGATC AGGTCTCAAAGTCTTGTCATCAAGGTTGAAAAGGCTGGAGAACCTTGACCTAAGTGGGAATCAGTGCAACGATAGCATTTTTTCATCTCTAAGTGGGTTT TCATCCCTCAAGTATTTAAATCTATCAAAGAATCAGCTGACAGGATCATCTACTGGTATCAATAGTTTTCAAGTGCTAGTTTCAGGGTTGAGGAATTTGG AGGAACTTCATCTTTATTCCAATAAATTGAACAACAACATTTTATCATCTCTCAGTGGATTTTCAACTCTCAAATCTCTAGATTTATCAGACAACATGTT CACAGGATCAACTGGTCTCAATGGTTTAAGGAATTTGGAGGAACTTTATCTGGGTTCCAATAAATTTAACGACAGCATTTTATTATCTCTCAGTGGATTT TCAACTCTCAAATCTCTAGATCTGTCAAACAATAGCTTCACGGGATCAACTGGTCTCAATGGTTTAAGGAATTTAGAAACGTTGTATCTGGATTCAACTG ACTTCAAGGAAAGCATTTTGATAGAGTCATTGGGAGCGTTGCCATCCCTCAAGACCTTAGATGCAAGTTATAGTAATTTTACACACTTTGGGAAAGGGTT GTGTAATTCGTCTAGCCTTGAAGAAGTGTTCCTCGATGATTCTTCACTCCCAGCAAGCTTTCTTAGGAACATTGGACCCTTGTCTACTCTTAAAGTCCTA TCCTTGGCCGGAGTTGACTTCAATAGCACCCTACCTGCTCAAGGTTGGTGTGAACTGAAGAATCTTGAAGAGCTATATCTCTCAGGAAACAATCTAAAGG GCGTACTCCCTCCTTGTTTGGGAAATCTATCATTTCTACAAATCTTGGATTTATCTCACAATCAATTGGAGGGAAATATTGCCTTTAGTTACCTTTCCCA TCTTAAGCAGCTCAGATCCCTCTCAATTAAAAATAACTACTTTCAAGTTCCAATATCATTTGGTTCATTTATGAACCTCTCCAACCTCAAGCTCATTGCA TGCGATAACAATGAGCTAATAGCTGCACCCAGTTTTCAGCCTTCAGCTCCCAAGTTCCAGCTTCTTTTCTTTAGTGCTTCAAACTGTACTCCAAAACCAC TCAAGGCTGGATTTACAAACTTCCTGCATAGCCAATACGATTTGATGTTTGTTGATCTATCCCACAACAAATTCGTTGGAGAACCTTTCCCATCTTGGCT GTTTGAGAATAATAGAAAGTTAAATCGACTATATTTGAGAGACACCTCAATTACAGGTCCTTTGCAGCTGCCACAACATCCAACACCCTACCTTCAGACA GTAGATATTTCTGGCAACACCATACATGGTCAAATTGCAAGGAACATATGTTCGATTTTTCCACGTTTGAAGAACTTCTTGATGGCTAACAATAGCCTCA CAGGTTGCATTCCTCGTTGTTTTGGGAATATGAGCTCTCTCGAATTCTTGGATCTTTCCAACAATCACATGTCTTGTGAACTGCTTGAGCATAATTTGCC AACAGTAGGCTCGTTGTGGTCCTTACAGCTGTCCAACAACAACTTCAGTGGGCGATTACCACCATCTGTGTTCAACATGACTTACCTACTTTACCTCCTT CTAGATGGAAACAAATTTGTAGGAGAAGTACCAGGTACCTTTTCTCTTGAATCATCACTTTTGTGGTTGGATATCAGTAACAATCTTTTGTCAGGCATGC TTCCAAGGGGAATAGGGAACTCTTCAAAAAACCAACTTGATGGAATTGATTTGTCCAGAAATCATTTTGAAGGTACCATTCCAATAGAATATTTCAATTC TTCTGGGCTTGAATTTGTAGATCTTTCTGAAAACAATCTGTCTGGGTCATTACCGTTGGGCTTCCATGCATTAGATTTACGCTATGTCCACCTATACGGA AATAGATTGAGCGGTCCACTGCCATATGATTTTTATAATCTCTCTTCGTTGGTGACATTAGATCTCGGCGATAACAACTTAACTGGGCCCATTCCAAATT GGATTGATAGCCTTTCAGAATTGAGCATTTTTGTTCTCAAATCTAATCAATTCAATGGGAAACTTCCTCATCAGTTATGCTTGTTAAGGAAATTAAGCAT ATTGGATCTTTCAGAAAATAATTTTTCTGGTCTGTTACCCTCATGTTTGAGCAATTTAAATCTTACGGCATCAGATGAAAAAACTTCGGTTGAACCTGAT TGGGGGTCACGAGATTATTGGAGCGAGGAAGAAATGTTTTCATCCATGGGGGGAAGAGGATTTTCTCCTTCTGACACAATGTTGTGGCCAGAGATCAGTG TAAAAATAGCTGTGGAGCTTACAGCAAAGAAAAATTTCTACACTTACGAAGGCGGTATCCTTCGTTACATGTCTGCTTTGGATCTTTCTTGTAACAGATT CACTGGAGAAATCCCGACAGAATGGGGAAACTTAAGTGGGATATATTCTCTAAATCTGTCACAAAATAATCTCACTGGATTGATCCCTTCATCTTTCTCC AATCTGAAGCACATAGAGAGCTTGGATCTTTCTCACAACAACTTGAATGGGAGAATTCCTGCACAACTCGTTGAACTGACCTTTCTAGCTGTTTTCAACG TGTCGTACAATAATTTGTCAGGAAGAACACCGGAGATGAAAAATCAATTTGGTACCTTTGATGAAAGCAGTTATAAAGGGAATCCTCTTCTTTGTGGACC TCCATTGCAAAACAGTTGCGACAAAACAGAATCACCATCAGCGAGAGTGCCTAATGATTGCAATGGAGATGGTGGCTTCATAGACATGTACAGTTTCTAT GCCAGTTTTGGTGTGTGTTACATAATTGCGGTGTTGACAATTGCAGCAGTACTGTGCATAAATCCGCATTGGCGACGCAGGTGGTTTTACTTCATTGAAG AATGCATCGACACTTGCTTCTGCTTTTTGGCTATAAACTTTCGCAAGTTGTCCAGATTCAGAAGGTGA
AA sequence Show only first row Show all	>Potri.005G009700.2 pacid=42802935 polypeptide=Potri.005G009700.2.p locus=Potri.005G009700 ID=Potri.005G009700.2.v4.1 annot-version=v4.1 MMMKKMGAWMLLALLTLVGDWCGRCYGCLEEERIGLLEIKPLFDPNSIYMRDWVEYSSNCCEWYGIECDNTTRRVIHLSLWDATDFLLGDWVLNASLFLP FKELQSLDLSFNGLVGCSENEGFEVLPSKLEVLDLTRNRFNNDKGILSCFNGISALKSLDLSDNQLTGSGLKVLSSRLKKLENLHLSANQCNDSIFSSIT GFSSLKSLDLSYNEVTGSGLKVLSSRLQKLENLHLSGNQCNDSIFSSITGFSSLKSLDLSDNQVTGSGLKVLSSRLKRLENLDLSGNQCNDSIFSSLSGF SSLKYLNLSKNQLTGSSTGINSFQVLVSGLRNLEELHLYSNKLNNNILSSLSGFSTLKSLDLSDNMFTGSTGLNGLRNLEELYLGSNKFNDSILLSLSGF STLKSLDLSNNSFTGSTGLNGLRNLETLYLDSTDFKESILIESLGALPSLKTLDASYSNFTHFGKGLCNSSSLEEVFLDDSSLPASFLRNIGPLSTLKVL SLAGVDFNSTLPAQGWCELKNLEELYLSGNNLKGVLPPCLGNLSFLQILDLSHNQLEGNIAFSYLSHLKQLRSLSIKNNYFQVPISFGSFMNLSNLKLIA CDNNELIAAPSFQPSAPKFQLLFFSASNCTPKPLKAGFTNFLHSQYDLMFVDLSHNKFVGEPFPSWLFENNRKLNRLYLRDTSITGPLQLPQHPTPYLQT VDISGNTIHGQIARNICSIFPRLKNFLMANNSLTGCIPRCFGNMSSLEFLDLSNNHMSCELLEHNLPTVGSLWSLQLSNNNFSGRLPPSVFNMTYLLYLL LDGNKFVGEVPGTFSLESSLLWLDISNNLLSGMLPRGIGNSSKNQLDGIDLSRNHFEGTIPIEYFNSSGLEFVDLSENNLSGSLPLGFHALDLRYVHLYG NRLSGPLPYDFYNLSSLVTLDLGDNNLTGPIPNWIDSLSELSIFVLKSNQFNGKLPHQLCLLRKLSILDLSENNFSGLLPSCLSNLNLTASDEKTSVEPD WGSRDYWSEEEMFSSMGGRGFSPSDTMLWPEISVKIAVELTAKKNFYTYEGGILRYMSALDLSCNRFTGEIPTEWGNLSGIYSLNLSQNNLTGLIPSSFS NLKHIESLDLSHNNLNGRIPAQLVELTFLAVFNVSYNNLSGRTPEMKNQFGTFDESSYKGNPLLCGPPLQNSCDKTESPSARVPNDCNGDGGFIDMYSFY ASFGVCYIIAVLTIAAVLCINPHWRRRWFYFIEECIDTCFCFLAINFRKLSRFRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G009700 [exp]	0	1
AT4G39830			Cupredoxin superfamily protein...		Potri.005G079400 [exp]	2.00	0.9949	Pt-AO1.3
AT3G02645			Plant protein of unknown funct...		Potri.001G337900 [exp]	3.16	0.9918
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.005G007900 [exp]	3.87	0.9832
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G124400 [exp]	4.24	0.9877
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G141450 [exp]	4.69	0.9869
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003800 [exp]	5.47	0.9917
AT2G46150			Late embryogenesis abundant (L...		Potri.001G098100 [exp]	6.70	0.9907
AT5G04500			glycosyltransferase family pro...		Potri.010G232700 [exp]	6.92	0.9846
AT3G22930		CML11	calmodulin-like 11 (.1)		Potri.013G040300 [exp]	7.00	0.9886
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G224100 [exp]	9.89	0.9833

Compare expression of checked genes

Potri.005G009700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.