Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09340 652 / 0 CSP41B, CRB, HIP1.3 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) AT3G63140 189 / 3e-56 CSP41A chloroplast stem-loop binding protein of 41 kDa (.1) AT1G75280 50 / 8e-07 NmrA-like negative transcriptional regulator family protein (.1) AT1G75290 49 / 3e-06 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G53500 45 / 7e-05 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT3G14790 45 / 9e-05 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006100 [exp] 726 / 0 AT1G09340 647 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Potri.002G053000 [exp] 199 / 7e-60 AT3G63140 594 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Potri.005G209500 [exp] 198 / 1e-59 AT3G63140 597 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Potri.018G101700 [exp] 44 / 0.0002 AT1G17890 549 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031435 [exp] 646 / 0 AT1G09340 644 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Lus10001525 [exp] 644 / 0 AT1G09340 638 / 0.0 heteroglycan-interacting protein 1.3, CHLOROPLAST STEM-LOOP BINDING PROTEIN OF 41 KDA, chloroplast RNA binding (.1) Lus10014669 [exp] 207 / 3e-63 AT3G63140 592 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Lus10006931 [exp] 204 / 6e-62 AT3G63140 582 / 0.0 chloroplast stem-loop binding protein of 41 kDa (.1) Lus10007355 [exp] 45 / 0.0001 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10005900 [exp] 42 / 0.0006 AT3G46440 513 / 0.0 UDP-XYL synthase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01370 [poplar] [flax] Epimerase NAD dependent epimerase/dehydratase family
Representative CDS sequence Show only first row Show all	>Potri.005G010266.2 pacid=42802882 polypeptide=Potri.005G010266.2.p locus=Potri.005G010266 ID=Potri.005G010266.2.v4.1 annot-version=v4.1 ATGGCTAGGTTGGTGGCTATGCAGCAACAAACTCAGCCTTCTTTATCTCTTCTACTTTCCTCTCTTTCTGACTTCAATGGCACTAGACTCCACTCTCAAG TCCAGTGTAAGAGAAGGGCATGGCAGACAAAGCGAGCATTACAAGTTTCAGCATCAAGTTCCAAGAACATTCTTATAATGGGAGGCACTAGATTTATTGG TGTGTTTTTGTCTAGACTTCTTGTCAAAGAGGGTCATCAGGTGACCTTGTTTACTAGAGGTAAAGCACCAATTACACAACAATTGCCAGGTGAATCAGAC CAGGATTATGCTGATTTTTCTTCCAAGGTCTTGCATTTGAAAGGAGACAGGAAAGATTTTGAATTTGTGAAAACTAGTCTTGCTGCAAAAGGCTTTGATG TTATCTATGATATAAATGGCCGTGAAGCAGTTGAAGTTGAACCTATACTGGATGCTCTGCCAAAGCTAGAACAGTTCATATACTGCTCTTCAGCTGGGGT TTACCTCAAATCTGATCTTTTACCACACAGCGAGAAAGATGCAGTTGATCCAAAGAGCAGGCACAAGGGAAAGCTTGAGACAGAGAGCTTATTAGAATCA AAGGGTGTTAACTGGACTTCTATAAGACCTGTCTACATCTATGGGCCCTTAAACTACAACCCTGTTGAAGAGTGGTTCTTTCACCGGTTGAAAGCAGGCC GCCCGATTCCAATTCCCAACTCAGGAATTCAAATAACCCAACTTGGTCATGTAAAGGATTTGGCAAAGGCTTTCGTTGAGGTTCTTGGTAATGACAAAGC CAGCCAGCAAGTATTTAACATATCAGGAGAGAAGTATGTCACTTTTGATGGATTAGCAAGGGCTTGTGCAAAGGCTGCTGGGTTCCCAGAACCTGTTATC GTCCACTATAACCCCAAAGAGTTCGACTTCGGGAAAAAAAAGGCTTTTCCATTCCGAGACCAGCATTTCTTTGCATCGATCGACAAAGCAAGGCATGTTC TTGGATGGGAACCTGAATTCGACCTCGTGGAAGGTCTTGCAGATTCTTACAACCTTGACTTTGGCACGGGAACATACAGGAAAGAGGCTGATTTCTCCAC TGATGACTTGATTCTAGGCAAGAGCCTTGTTCTTCAGGCCTAG
AA sequence Show only first row Show all	>Potri.005G010266.2 pacid=42802882 polypeptide=Potri.005G010266.2.p locus=Potri.005G010266 ID=Potri.005G010266.2.v4.1 annot-version=v4.1 MARLVAMQQQTQPSLSLLLSSLSDFNGTRLHSQVQCKRRAWQTKRALQVSASSSKNILIMGGTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESD QDYADFSSKVLHLKGDRKDFEFVKTSLAAKGFDVIYDINGREAVEVEPILDALPKLEQFIYCSSAGVYLKSDLLPHSEKDAVDPKSRHKGKLETESLLES KGVNWTSIRPVYIYGPLNYNPVEEWFFHRLKAGRPIPIPNSGIQITQLGHVKDLAKAFVEVLGNDKASQQVFNISGEKYVTFDGLARACAKAAGFPEPVI VHYNPKEFDFGKKKAFPFRDQHFFASIDKARHVLGWEPEFDLVEGLADSYNLDFGTGTYRKEADFSTDDLILGKSLVLQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09340		CSP41B, CRB, HI...	heteroglycan-interacting prote...		Potri.005G010266 [exp]	0	1
AT4G12800		PSAL	photosystem I subunit l (.1)		Potri.014G175600 [exp]	3.74	0.9792	PSAL.2
AT3G63140		CSP41A	chloroplast stem-loop binding ...		Potri.002G053000 [exp]	4.00	0.9753
AT2G26500			cytochrome b6f complex subunit...		Potri.004G147300 [exp]	4.89	0.9747
AT1G80380			P-loop containing nucleoside t...		Potri.003G058500 [exp]	8.24	0.9664
AT5G36700		ATPGLP1, 2-PHOS...	2-phosphoglycolate phosphatase...		Potri.008G077400 [exp]	10.09	0.9656
AT4G35090		CAT2	catalase 2 (.1.2)		Potri.005G100400 [exp]	12.44	0.9658	CAT2
AT1G54740			Protein of unknown function (D...		Potri.013G027100 [exp]	12.72	0.9127
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Potri.019G089700 [exp]	13.96	0.9586
AT1G11860			Glycine cleavage T-protein fam...		Potri.011G006800 [exp]	14.86	0.9576	gdcT1,Pt-GDCST.1
AT1G32470			Single hybrid motif superfamil...		Potri.003G089300 [exp]	17.54	0.9616	gdcH3,Pt-GDCH.3

Compare expression of checked genes

Potri.005G010266 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.