Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09330 328 / 1e-116 ECHIDNA, ECH unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006250 [exp] 355 / 4e-127 AT1G09330 330 / 2e-117 unknown protein Potri.002G191700 [exp] 248 / 4e-85 AT1G09330 240 / 6e-82 unknown protein Potri.014G116900 [exp] 160 / 1e-50 AT1G09330 158 / 1e-49 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031433 [exp] 336 / 2e-119 AT1G09330 315 / 6e-111 unknown protein Lus10010898 [exp] 332 / 4e-118 AT1G09330 313 / 2e-110 unknown protein Lus10010063 [exp] 296 / 9e-104 AT1G09330 308 / 1e-108 unknown protein Lus10004514 [exp] 248 / 2e-84 AT1G09330 269 / 2e-92 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05832 [poplar] [flax] DUF846 Eukaryotic protein of unknown function (DUF846)
Representative CDS sequence Show only first row Show all	>Potri.005G010400.1 pacid=42803989 polypeptide=Potri.005G010400.1.p locus=Potri.005G010400 ID=Potri.005G010400.1.v4.1 annot-version=v4.1 ATGGATCCTAGCCAGCCCCCTGGTGAAAATTACGCCAATCCAAAGACATGTTTCTTTCATGTTCTCTTCAAGGCAGGAGCTTTGGCATTTTACATACTCT CTGCTCTTTTTTTTAATAGCTTTGTCATTATTTTTGTGGTGACTGTGCTTCTTGCTGCTCTTGATTTTTGGGTGGTCAAGAATGTGAGTGGTCGGATTTT AGTTGGCCTTAGGTGGTGGAATGAGATAAATGATCTGGGTGAGAGTGTGTGGAAATTTGAATCCCTTGACCAAGAGTCATTAGCCCGAATGAACAAGAAA GACTCATGGCTGTTCTGGTGGACTCTTTACATAACAGCGGTCGCCTGGATTGTGCTTGGAATTTTCTCTCTCATAAGGTTCCAAGCAGATTACTGCCTCA TTGTTGGAGTATGTTTGACCCTCAGCATTGCGAACATTGTTGGCTTCACCAAATGTCGCAAAGATGCTAAGAAGCAGTTCCAGCAGTTCGCATCGCAGAC CATTGCATCTCGAGTGTCATCTACCATACAGTCAGCATTCAGTGTTGTGTGA
AA sequence Show only first row Show all	>Potri.005G010400.1 pacid=42803989 polypeptide=Potri.005G010400.1.p locus=Potri.005G010400 ID=Potri.005G010400.1.v4.1 annot-version=v4.1 MDPSQPPGENYANPKTCFFHVLFKAGALAFYILSALFFNSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKK DSWLFWWTLYITAVAWIVLGIFSLIRFQADYCLIVGVCLTLSIANIVGFTKCRKDAKKQFQQFASQTIASRVSSTIQSAFSVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09330		ECHIDNA, ECH	unknown protein		Potri.005G010400 [exp]	0	1
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.019G029200 [exp]	1.41	0.9680	VATE.1
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.014G116500 [exp]	1.41	0.9719	Pt-ARF1.1
AT3G09800			SNARE-like superfamily protein...		Potri.001G197200 [exp]	1.73	0.9638
AT3G09740		ATSYP71, SYP71	syntaxin of plants 71 (.1)		Potri.006G129500 [exp]	2.00	0.9627	Pt-SYP71.3
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.018G037500 [exp]	3.46	0.9521
AT3G07950			rhomboid protein-related (.1)		Potri.008G041100 [exp]	3.87	0.9627
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.012G073300 [exp]	4.24	0.9499	Pt-VFPP2.1
AT1G60970			SNARE-like superfamily protein...		Potri.003G043200 [exp]	4.24	0.9626
AT4G35410			Clathrin adaptor complex small...		Potri.014G079000 [exp]	4.89	0.9562	AP19.1
AT2G39630			Nucleotide-diphospho-sugar tra...		Potri.010G204000 [exp]	5.65	0.9505

Compare expression of checked genes

Potri.005G010400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.