Plant FIBer expression Database

Potri.005G010700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G15510 319 / 4e-110 Photosystem II reaction center PsbP family protein (.1.2.3)
AT3G55330 57 / 1e-09 PPL1 PsbP-like protein 1 (.1)
AT2G39470 44 / 5e-05 PnsL1, PPL2 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G006500
[exp]
476 / 3e-172 AT4G15510 306 / 5e-105 Photosystem II reaction center PsbP family protein (.1.2.3)
Potri.010G210200
[exp]
62 / 3e-11 AT3G55330 299 / 2e-103 PsbP-like protein 1 (.1)
Potri.008G050300
[exp]
44 / 5e-05 AT3G55330 164 / 8e-51 PsbP-like protein 1 (.1)
Potri.010G210000
[exp]
43 / 8e-05 AT2G39470 278 / 3e-95 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000352
[exp]
342 / 1e-119 AT4G15510 309 / 4e-106 Photosystem II reaction center PsbP family protein (.1.2.3)
Lus10000614
[exp]
342 / 3e-119 AT4G15510 308 / 9e-106 Photosystem II reaction center PsbP family protein (.1.2.3)
Lus10030326
[exp]
62 / 5e-11 AT3G55330 268 / 7e-91 PsbP-like protein 1 (.1)
Lus10003289
[exp]
60 / 2e-10 AT3G55330 267 / 7e-91 PsbP-like protein 1 (.1)
Lus10040314
[exp]
49 / 1e-06 AT2G39470 254 / 5e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3)
Lus10023436
[exp]
49 / 1e-06 AT2G39470 255 / 3e-86 Photosynthetic NDH subcomplex L 1, PsbP-like protein 2 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0619 Mog1p_PsbP PF01789 PsbP PsbP
Representative CDS sequence
>Potri.005G010700.1 pacid=42803982 polypeptide=Potri.005G010700.1.p locus=Potri.005G010700 ID=Potri.005G010700.1.v4.1 annot-version=v4.1
ATGGCAAGAATTCTTGACTCGTTCCCTCCTCCACTTCAACTCACCCATCCAACTCTTTCTCGCTCTACTTGGCCCAGGTGCTCAATGCCCATCTCACCAA
ATCCCACTTTCTGCAGCTCTATTTCTCATTACAACCAACTGACTAAAGCTTTTGCAGTTCCAAGGAGAAATGCAATGGCATTGATCTTGTCAAGTTACAT
GTTCTCAGAATTTGGTTTCGACAACCTTGCATTTGCTCAACAGTCCGTTGGCTTCAGGGAATACATTGATCAATTTGATGGGTATTCATTCAAGTACCCT
CAGAACTGGATTCAAGTTCGAGGTGCTGGAGCTGATATATTCTTCAGAGACCCTTTTGTTCTTGATGAAAATCTCTCAGTGGAGTTGTCGTCTCCTTCAT
CATCCAGGTACAAGAGTGTTGAAGACTTGGGCCCTCCACAAGAAGCTGGAAAGAAGGTGCTTAAGCAGTATTTGACAGAGTTCATGTCTACTAGACTTGG
CGTCAGGCGTGAATCAAATATTCTTTCGACATCCTCTCGAGTCGCTGATGACGGAAAGCTTTATTATCAAGTTGAGGTAAACATCAAGTCCTACGCAAAT
AACAACGAACTGGCTGTTATGCCTAGGGAAAGAGTAGTTCGATTGGAATGGGATCGCCGGTACCTGTCAGTTCTTGGAGTTGAAAACAATCAGCTGTACG
AGTTAAGGTTACAGACACCAGAAAATGTATTTGTAGAAGAGGAAAATGATCTTCGCAAAGTCATGGATTCCTTTAGAGTGAATAAGATTGCTGTTTAA
AA sequence
>Potri.005G010700.1 pacid=42803982 polypeptide=Potri.005G010700.1.p locus=Potri.005G010700 ID=Potri.005G010700.1.v4.1 annot-version=v4.1
MARILDSFPPPLQLTHPTLSRSTWPRCSMPISPNPTFCSSISHYNQLTKAFAVPRRNAMALILSSYMFSEFGFDNLAFAQQSVGFREYIDQFDGYSFKYP
QNWIQVRGAGADIFFRDPFVLDENLSVELSSPSSSRYKSVEDLGPPQEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRVADDGKLYYQVEVNIKSYAN
NNELAVMPRERVVRLEWDRRYLSVLGVENNQLYELRLQTPENVFVEEENDLRKVMDSFRVNKIAV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G15510 Photosystem II reaction center... Potri.005G010700
[exp]
0 1
AT3G25920 RPL15 ribosomal protein L15 (.1) Potri.008G121100
[exp]
1.41 0.9852
AT2G30570 PSBW photosystem II reaction center... Potri.005G218800
[exp]
3.46 0.9837
AT5G45670 GDSL-like Lipase/Acylhydrolase... Potri.018G089100
[exp]
4.69 0.9666
AT4G01310 Ribosomal L5P family protein (... Potri.002G154600
[exp]
6.00 0.9767
AT4G30845 unknown protein Potri.006G180200
[exp]
6.32 0.9713
AT1G50900 LTD, GDC1 LHCP translocation defect, Gra... Potri.001G420900
[exp]
6.92 0.9691
AT1G20340 PETE2, DRT112 PLASTOCYANIN 2, DNA-DAMAGE-REP... Potri.002G016000
[exp]
7.21 0.9755 PETE.2
AT5G30510 ARRPS1, RPS1 ribosomal protein S1 (.1) Potri.010G150300
[exp]
7.74 0.9731
AT4G23890 NdhS, CRR31 NADH dehydrogenase-like comple... Potri.003G140400
[exp]
9.94 0.9696
AT1G08380 PSAO photosystem I subunit O (.1) Potri.004G199400
[exp]
10.09 0.9730

Potri.005G010700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.