Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56560 946 / 0 A/N-InvA alkaline/neutral invertase A, Plant neutral invertase family protein (.1) AT3G05820 916 / 0 At-A/N-InvH Arabidopsis alkaline/neutral invertase H, alkaline/neutral invertase H, invertase H (.1) AT3G06500 871 / 0 A/N-InvC alkaline/neutral invertase C, Plant neutral invertase family protein (.1) AT5G22510 758 / 0 INV-E, At-A/N-InvE Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) AT4G34860 579 / 0 A/N-InvB alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) AT4G09510 574 / 0 A/N-InvI, CINV2 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2) AT1G22650 566 / 0 A/N-InvD alkaline/neutral invertase D, Plant neutral invertase family protein (.1) AT1G35580 565 / 0 A/N-InvG, CINV1 alkaline/neutral invertase G, cytosolic invertase 1 (.1.2.3) AT1G72000 558 / 0 A/N-InvF alkaline/neutral invertase F, Plant neutral invertase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006600 [exp] 1196 / 0 AT1G56560 945 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Potri.008G101500 [exp] 956 / 0 AT3G06500 911 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Potri.008G024100 [exp] 759 / 0 AT5G22510 894 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.010G236100 [exp] 755 / 0 AT5G22510 897 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G186500 [exp] 737 / 0 AT5G22510 913 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Potri.004G167500 [exp] 578 / 0 AT4G34860 994 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.009G129000 [exp] 572 / 0 AT4G34860 972 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.005G239400 [exp] 572 / 0 AT4G34860 927 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Potri.019G082000 [exp] 566 / 0 AT4G09510 981 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031431 [exp] 997 / 0 AT1G56560 936 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10010900 [exp] 994 / 0 AT1G56560 937 / 0.0 alkaline/neutral invertase A, Plant neutral invertase family protein (.1) Lus10037817 [exp] 926 / 0 AT3G06500 927 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10017095 [exp] 920 / 0 AT3G06500 933 / 0.0 alkaline/neutral invertase C, Plant neutral invertase family protein (.1) Lus10043375 [exp] 767 / 0 AT5G22510 918 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10019532 [exp] 762 / 0 AT5G22510 922 / 0.0 Arabidopsis alkaline/neutral invertase E, alkaline/neutral invertase E, alkaline/neutral invertase (.1) Lus10033144 [exp] 582 / 0 AT4G34860 944 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10034525 [exp] 580 / 0 AT4G34860 943 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10042390 [exp] 566 / 0 AT4G34860 982 / 0.0 alkaline/neutral invertase B, Plant neutral invertase family protein (.1.2) Lus10006078 [exp] 566 / 0 AT4G09510 1001 / 0.0 alkaline/neutral invertase I, cytosolic invertase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [poplar] [flax] 6_Hairpin PF12899 [poplar] [flax] Glyco_hydro_100 Alkaline and neutral invertase
Representative CDS sequence Show only first row Show all	>Potri.005G010800.2 pacid=42805087 polypeptide=Potri.005G010800.2.p locus=Potri.005G010800 ID=Potri.005G010800.2.v4.1 annot-version=v4.1 ATGAGACCCTCTTGTAGATTTTTCTTATCTAAGAAGAATCGAGTCTTTTTTAATCTCCATCATAGTCTAACAAGCAATTTATCAGGGAACCAGTTTAATT TTGAGAAAAACAAGCAATTTTTTACCTACCCTTTTAGAATCTTGGGGTCCAGGACCATTTTCAAGGAAGCCCAGAAATCTTTTTGTGCTCCCTATATCAG TTTTGGCCAATCTCGGCTTATAACAGGAGACTTTAGGGGGGCTTCTATTGTTGCTAGTGTTGCATCACAAGTTAGAAAGTTTTCAACATCTGTTGAGACA AGAGTGAATGATAATAATTTTGAGAGAATTTATGTGCAAAATGGGATCGGTATTAAGCCTTTGGTGGTTGAGAGGATTGATAAAGATGAGAATGTTTTAG GGGACGAAGAGTCTAGGATAGGGGTGCTTGTTGATGATTGTGAAAGTGTAAATAGAGAGAATTTGGATGGTGGTCAAGAAGTTGAGATTGTTAGTCCTAA GAGGGAAGAGAGTGAGATAGAAAAGGAGGCATGGAAGTTGTTGAATGATGCTGTTGTTATGTATTGTGGGAGTCCTGTGGGAACTGTGGCCGCGAATGAT CCTGGGGATAAGATGCCATTGAATTATGATCAGGTGTTTATTCGTGATTTCGTGCCTTCAGCTCTTGCGTTTTTGCTCAGAGGTGAAGGAGAGATTGTGA AGAATTTCTTGCTTCATACCTTGCAATTGCAGAGTTGGGAGAAAACAGTGGACTGCTATAGTCCAGGCCAGGGGCTGATGCCTGCCAGTTTTAAAGTCAG AACGGTGCCTCTTGATGACAGTAAATTTGAAGAAGTTTTAGATCCAGATTTTGGTGAATCAGCTATTGGCCGTGTTGCACCTGTGGATTCTGGGTTGTGG TGGATTATTTTGTTGAGGGCATATGGGAAACTCACCGGTGACTATGCCTTACAAGAAAGGGTGGATGTTCAGACTGGCATAAAACTGATCTTGAACTTGT GCTTAACTGATGGGTTTGATATGTTTCCTTCTCTACTAGTCACTGATGGCTCCTGCATGATAGATCGGCGGATGGGTATCCATGGTCACCCCCTTGAGAT TCAAGCCTTGTTTTACTCAGCTTTACGATGCTCACGCGAGATGATTGTTGTAAATGATGGATCAAAGAATTTAGTTAGGGCTATCAACAACAGACTCAGT GCTCTGTCATTCCACATTAGAGAATACTATTGGGTAGATATGAACAAGATCAATGTGATATACCGGTATAAAACAGAAGAGTATTCTACAGAAGCCACCA ACAAATTCAATATTTATCCTGAACAAATTCCATCATGGCTCATGGACTGGATACCTGAGGAAGGCGGGTATTTGATTGGCAATCTGCAGCCAGCTCACAT GGATTTTAGGTTTTTCACTCTTGGAAATCTTTGGTCCGTTATTTCATCTTTGGGTACTCCAAAACATAATGAAGCTATTCTAAATCTGATTGAAGCCAAA TGGGATGATCTTGTGGGAAATATGCCTCTTAAGATATGCTACCCTGCTCTAGAGCATGAAGATTGGCGTATAATCACTGGCAGTGACCCAAAGAACACCC CTTGGTCATATCATAATGGTGGGTCGTGGCCAACACTTCTGTGGCAGTTCACTTTGGCATGCATAAAGATGAACCGAGTTGAACTAGCTCAGAAGGCGAT TGCTTTGGCTGAGAAGAGACTTCAAGTTGACCATTGGCCAGAGTATTATGACACCCGAACTGGGAAGTTTATCGGAAAGCAATCCCGTCTCTATCAAACA TGGACGGTTGCAGGTTTCTTAACATCAAAAATTCTCTTGGAGAACCCACAGAGGGCGTCCTTATTATTCTGGGATGAGGATTATGAGCTTCTTGAGATAT GTGTTTGTGGACTTAACACTAGTGGCCGAAAGAGGTGTTCTCGAGGTGCTGCTAAGTCTCAGATTCTTGTGTAG
AA sequence Show only first row Show all	>Potri.005G010800.2 pacid=42805087 polypeptide=Potri.005G010800.2.p locus=Potri.005G010800 ID=Potri.005G010800.2.v4.1 annot-version=v4.1 MRPSCRFFLSKKNRVFFNLHHSLTSNLSGNQFNFEKNKQFFTYPFRILGSRTIFKEAQKSFCAPYISFGQSRLITGDFRGASIVASVASQVRKFSTSVET RVNDNNFERIYVQNGIGIKPLVVERIDKDENVLGDEESRIGVLVDDCESVNRENLDGGQEVEIVSPKREESEIEKEAWKLLNDAVVMYCGSPVGTVAAND PGDKMPLNYDQVFIRDFVPSALAFLLRGEGEIVKNFLLHTLQLQSWEKTVDCYSPGQGLMPASFKVRTVPLDDSKFEEVLDPDFGESAIGRVAPVDSGLW WIILLRAYGKLTGDYALQERVDVQTGIKLILNLCLTDGFDMFPSLLVTDGSCMIDRRMGIHGHPLEIQALFYSALRCSREMIVVNDGSKNLVRAINNRLS ALSFHIREYYWVDMNKINVIYRYKTEEYSTEATNKFNIYPEQIPSWLMDWIPEEGGYLIGNLQPAHMDFRFFTLGNLWSVISSLGTPKHNEAILNLIEAK WDDLVGNMPLKICYPALEHEDWRIITGSDPKNTPWSYHNGGSWPTLLWQFTLACIKMNRVELAQKAIALAEKRLQVDHWPEYYDTRTGKFIGKQSRLYQT WTVAGFLTSKILLENPQRASLLFWDEDYELLEICVCGLNTSGRKRCSRGAAKSQILV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56560		A/N-InvA	alkaline/neutral invertase A, ...		Potri.005G010800 [exp]	0	1
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.011G170000 [exp]	2.82	0.8530	Pt-PEX5.1
AT4G12290			Copper amine oxidase family pr...		Potri.001G118300 [exp]	2.82	0.8558
AT5G24870			RING/U-box superfamily protein...		Potri.006G274700 [exp]	4.47	0.8250
AT2G15695			Protein of unknown function DU...		Potri.009G103500 [exp]	10.19	0.8232
AT3G59910			Ankyrin repeat family protein ...		Potri.007G146500 [exp]	10.39	0.8268
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.001G036000 [exp]	10.53	0.8002
AT2G14910			unknown protein		Potri.001G298200 [exp]	10.81	0.8469
AT5G13950			unknown protein		Potri.014G144100 [exp]	12.24	0.8358
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.006G013000 [exp]	12.64	0.8205
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Potri.003G129800 [exp]	15.29	0.8341

Compare expression of checked genes

Potri.005G010800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.