Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56570 667 / 0 PGN PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 354 / 6e-112 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15130 342 / 2e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 349 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 343 / 2e-108 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49170 338 / 3e-106 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47840 332 / 4e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 331 / 6e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 334 / 7e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 332 / 1e-104 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G006700 [exp] 982 / 0 AT1G56570 732 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 363 / 5e-117 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G059400 [exp] 360 / 3e-114 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G124400 [exp] 353 / 6e-114 AT5G39350 785 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 352 / 1e-111 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 352 / 3e-111 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G155000 [exp] 347 / 1e-110 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G151200 [exp] 347 / 1e-110 AT1G11290 454 / 1e-148 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G244500 [exp] 344 / 6e-110 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019891 [exp] 705 / 0 AT1G56570 666 / 0.0 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014027 [exp] 433 / 4e-149 AT1G56570 399 / 1e-135 PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 385 / 7e-124 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019098 [exp] 354 / 3e-111 AT3G47840 697 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008136 [exp] 341 / 2e-109 AT5G39350 639 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 341 / 2e-109 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10017446 [exp] 344 / 2e-108 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 348 / 3e-108 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007806 [exp] 342 / 5e-107 AT3G03580 967 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013176 [exp] 330 / 4e-105 AT5G39350 621 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G010900.1 pacid=42805583 polypeptide=Potri.005G010900.1.p locus=Potri.005G010900 ID=Potri.005G010900.1.v4.1 annot-version=v4.1 ATGATCACCAAAAGACTGCTATCCACCAGTAACTTCCATCCTTTCCCACCTATGATAAAAAACTACCTACAGTGGGCCCAAAACACACCAAAGTACCAAT CAAGCACAGCTTTTAAGCCAAAGGGTACCTCCATTCTAGCTACAGACCTCTTAAAATCATATTTTGAAAAGGGCCTAATCAGTCGAGCACGTAACTTGTT TGATGAAATGCCTGAGAGAGATGTTGTTGCATTGACCGCGATGATTTCAGGGTACACGCATTGTAATGAATACACTCAAGCATGGAGTGTTTTTCTTGAT ATGGTAAAGAATGACAATGTCCCACCAAATGCATTTACAATATCAAGTGTTCTAAAGGCTTGTAAAGGAATGAACAGTGTTTTTTGTGGGGGTTTGGTTC ATGGATTGGCTATTAAAAGAAGGTTTGTGGAGGGGTTTATTTATGTAGATAATGCTCTCATGGATATGTATGCTACTTGTGGTGTAACTATGAGGGATGC TTGTGTTGTTTTTCACGATATTAAAGAGAAGAATGTTGTGTCATGGACTACCTTGATTGCTGGTTACACTCACAGAGGTAATGGGAGTCGCGCAGTTCAA GTCTTCCGGGAAATGTCACTGGAGGGAGCAGAATTGAACCCACATAGCATTTCGATTGCTGTTAGAGCTTGTGCTTCAGTCGGCTCAAATATTCTTGGCC GACAAATACATACGGCAGTGATTAAACATGGATTTGAGTCCGATCTTCCTGTCATGAATTCTATACTTGATATGTATTGTAGGTGTGGTTGTTTATCCGA GGCAAAGGAGTACTTCAATGAGATGAGTGAAAAAGATTTGATCACATGGAATACATTAATAGCTGGGTACGAAAGATCAGATTCTATAGAGCCTCTCTTT ATATTTTCACAAATGGAGTCAGAAGGTTTTAGTCCAAATTGCTTCACTTTCACCAGTCTTGTAGCAGCCTGTGCAAACGCAGCAGCTTTGCAATGTGGAC AGCAGGTTCATGGAGGAATTTTTCGCAGAGGGCTTGATGGAAATCTGGAATTGGCTAATGCCTTGATTGATATGTATGCAAAGTGTGGCAATATAATTGA TTCACAAAAAAATTTTAGTGAAATGTCCTGTACAAATTTAGTCTCCTGGACTTCTATGATGATTGGATATGGGACTCATGGATATGGTAAAGAGGCTGTT GAGTTGTTTGATGAGATGGTCAGGTCAGGCATCAGACCTGATCAGGTAGTGTTTATGGCAGTTCTACATGCATGTAGTCATGCCGGACTAGTTGATCAAG GCTTGAGGTACTTCAACTGTATGTTGGATGATTATCACATCAAGCCAAATCAGGAGATTTATGGGTGTGTTGTAGGTTTGCTGGGCAGAGCTGGAAGAGT TGAGGAGGCCTATCATCTAATAAGAAGCATGCCATTTATGGCTGATGAGTCTGTTTGGGGTGCTCTTCTTGGTGCTTGCAAGGCACATAACCTTTCAAAG TTGGGCAAGTTGGCAGCTAAGAAGGCATTGGCATTGAAACCAAATATGGTTGAGACTTATGTGATGCTGTCAAATATCTATGCTGCAGAAGGAAAATGGG GAGAAGCTGAAAGAATGAGAAAGCTGATGAAGAGAGCAGGCTCTAAAAAAGAGGCCGGTAGGAGTTGGATTGAGATGCATCTAATGATATCCAGGGTTAT CGAAAAATCTTGTTAA
AA sequence Show only first row Show all	>Potri.005G010900.1 pacid=42805583 polypeptide=Potri.005G010900.1.p locus=Potri.005G010900 ID=Potri.005G010900.1.v4.1 annot-version=v4.1 MITKRLLSTSNFHPFPPMIKNYLQWAQNTPKYQSSTAFKPKGTSILATDLLKSYFEKGLISRARNLFDEMPERDVVALTAMISGYTHCNEYTQAWSVFLD MVKNDNVPPNAFTISSVLKACKGMNSVFCGGLVHGLAIKRRFVEGFIYVDNALMDMYATCGVTMRDACVVFHDIKEKNVVSWTTLIAGYTHRGNGSRAVQ VFREMSLEGAELNPHSISIAVRACASVGSNILGRQIHTAVIKHGFESDLPVMNSILDMYCRCGCLSEAKEYFNEMSEKDLITWNTLIAGYERSDSIEPLF IFSQMESEGFSPNCFTFTSLVAACANAAALQCGQQVHGGIFRRGLDGNLELANALIDMYAKCGNIIDSQKNFSEMSCTNLVSWTSMMIGYGTHGYGKEAV ELFDEMVRSGIRPDQVVFMAVLHACSHAGLVDQGLRYFNCMLDDYHIKPNQEIYGCVVGLLGRAGRVEEAYHLIRSMPFMADESVWGALLGACKAHNLSK LGKLAAKKALALKPNMVETYVMLSNIYAAEGKWGEAERMRKLMKRAGSKKEAGRSWIEMHLMISRVIEKSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56570		PGN	PENTATRICOPEPTIDE REPEAT PROTE...		Potri.005G010900 [exp]	0	1
AT1G31240			Bromodomain transcription fact...		Potri.015G118200 [exp]	3.87	0.8008
AT4G33990		EMB2758	embryo defective 2758, Tetratr...		Potri.001G466066 [exp]	5.29	0.8338
AT4G01200			Calcium-dependent lipid-bindin...		Potri.002G166400 [exp]	5.47	0.8538
AT1G53720		ATCYP59, CYP59	cyclophilin 59 (.1)		Potri.005G097500 [exp]	10.39	0.7262
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.009G018700 [exp]	18.00	0.7659
AT1G65780			P-loop containing nucleoside t...		Potri.004G077800 [exp]	20.12	0.7568
AT1G79190			ARM repeat superfamily protein...		Potri.007G067700 [exp]	20.78	0.8215
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.010G226901 [exp]	23.81	0.7429
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Potri.003G222400 [exp]	30.33	0.7695	Pt-LEN1.1
AT5G45390		NCLPP3, NCLPP4,...	NUCLEAR-ENCODED CLP PROTEASE P...		Potri.001G130601 [exp]	33.82	0.7138

Compare expression of checked genes

Potri.005G010900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.