Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08070 572 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22690 556 / 0 unknown protein AT2G29760 518 / 7e-174 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 504 / 7e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 504 / 3e-167 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G40405 496 / 7e-167 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 491 / 2e-165 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 488 / 1e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 483 / 9e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G14820 486 / 2e-161 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G040100 [exp] 605 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 583 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G071800 [exp] 573 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083700 [exp] 563 / 0 AT3G22690 1050 / 0.0 unknown protein Potri.013G044700 [exp] 549 / 0 AT3G22690 582 / 0.0 unknown protein Potri.016G065500 [exp] 544 / 0 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G086200 [exp] 540 / 0 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 529 / 5e-178 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 514 / 5e-171 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010901 [exp] 627 / 0 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031430 [exp] 577 / 0 AT5G06540 350 / 1e-115 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10033026 [exp] 575 / 0 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 516 / 1e-174 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 512 / 2e-171 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 509 / 2e-170 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 504 / 1e-169 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 502 / 7e-169 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 500 / 6e-166 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 492 / 2e-162 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.005G011000.1 pacid=42803542 polypeptide=Potri.005G011000.1.p locus=Potri.005G011000 ID=Potri.005G011000.1.v4.1 annot-version=v4.1 ATGAAACTTTCCAGACTAAACTATCTTTCAAAACCCTTCAAGATTCCAACTTTCACTCTCAAACCAACCTTAACTCTCCCAATCTTAGAAACCCACTTGC AAAAATGTCAAAACATCAAGCAATTCAATCAAATCCTCTCGCAAATGATCCTTTCTGGCTTCTTCAAAGACAGTTTTGCAGCTAGTAGACTCCTTAAGTT CTCCACTGAATTACCTTTCATTAACATCAACCAGTCATATCAAATATTTTCACACATTGAGAACCCAAATGGGTTCATTTGTAATACCATGATGAAGGGT TATATGCAAAGAAATAGCCCTTGTAAAGCTATATGGGTTTATAAGTTTATGCTTGAAAGCAATGTAGCAGCTGATAATTATACTTATCCAATATTGTTTC AGTCTTGTTCTATTAGATTAGCTGAGTTTGATGGGAAATGTATTCAAGATCATGTTTTGAAGGTGGGTTTTGATTCTGATGTTTATATACAGAACACTCT GATTAATATGTACGCTGTTTGTGGGAATTTAAGTGATGCACGTAAGGTGTTTGATGGAAGTTCTGTTTTGGACATGGTTTCGTGGAATTCGATGTTGGCA GGGTATGTTTTGGTAGGGAACGTGGAGGAGGCTAAGGATGTGTATGATAGGATGCCTGAAAGGAATGTAATTGCTTCGAATTCGATGATTGTTTTGTTTG GTAAGAAAGGTAATGTTGAAGAGGCCTGCAAATTGTTTAATGAAATGAAACAGAAGGATTTAGTATCGTGGAGTGCATTGATTTCATGTTATGAGCAGAA TGAGATGTATGAGGAGGCTTTGATTTTGTTCAAGGAAATGAATGCTAATGGAATTATGGTGGATGAGGTCGTGGTGCTTAGTGTTCTTTCAGCATGTTCT CGCTTGTTGGTGGTTATAACAGGGAAGTTGGTACATGGTTTGGTTGTGAAGGTTGGGATTGAGACTTATGTTAACCTTCAAAATGCGTTGATTCACATGT ATTCAAGTTGTGAAGAAGTGGTTACTGCTCAAAAGTTGTTTAGTGAGAGTTGTTGCTTGGATCAAATATCATGGAATTCTATGATATCTGGCTACGTTAA ATGTGGGGAAATTGAAAAAGCGAGGGCTTTATTCGATTCAATGCCTGACAAAGATAATGTATCATGGAGTGCAATGATATCAGGTTATGCTCAACAGGAC AGATTTACTGAGACTTTAGTTCTGTTCCAGGAAATGCAGATTGAAGGAACAAAGCCAGATGAGACGATTTTGGTTAGTGTGATCTCAGCTTGTACGCACC TGGCTGCTCTTGACCAAGGCAAGTGGATTCATGCTTATATAAGGAAGAACGGGCTAAAGATTAATATCATTTTGGGTACAACTCTTATAAACATGTATAT GAAATTAGGGTGTGTTGAAGATGCTTTGGAGGTTTTCAAAGGGTTGGAGGAGAAGGGGGTTTCTACTTGGAACGCTCTCATTCTTGGTTTGGCAATGAAT GGATTAGTGGACAAGTCACTCAAAACATTTTCAGAGATGAAGGAACATGGTGTAACACCTAATGAGATAACCTTTGTAGCAGTTCTTGGGGCTTGCAGAC ACATGGGCTTAGTGGATGAGGGACACCGTCATTTTAATTCCATGATTCAGGAGCACAAGATTGGGCCCAACATCAAGCATTATGGATGCATGGTCGATCT TCTAGGACGTGCAGGTATGCTAAAAGAAGCAGAGGAACTCATTGAGAGTATGCCAATGGCACCAGATGTTTCCACTTGGGGTGCCTTGCTTGGAGCTTGT AAGAAATACGGTGACAATGAAACCGGGGAGAGGATAGGAAGAAAGCTTGTAGAACTTCATCCTGACCATGATGGGTTCAATGTGTTACTTTCAAACATAT ATGCTTCAAAGGGCAATTGGGTTGATGTTCTTGAAGTTCGGGGAATGATGAGGCAACATGGGGTGGTGAAGACCCCAGGTTGTAGCATGATTGAAGCACA TGGTAGAGTTCACGAGTTCCTCGCTGGAGATAAGACACACCCTCAGAATGAACATATCGAACATATGTTAGATGAAATGGCTAAGAAATTAAAGTTGGAA GGTTATGCACCAGATACACGTGAGGTTTCCCTTGATATTGATGAAGAAGAAAAGGAAACTACTCTGTTTAGACACAGTGAGAAGCTTGCAATTGCCTTTG GGCTTATTGCTATTGATCCACCAACACCAATAAGGATAGTGAAGAATTTGCGAATATGCAATGATTGTCACACGGCAGCAAAGTTGATCTCTAAAGCTTT TAATCGTGAAATTGTGGTGAGGGATCGGCATCGCTTCCACCACTTCAAGCAGGGTTCTTGTTCATGCATGGATTATTGGTAG
AA sequence Show only first row Show all	>Potri.005G011000.1 pacid=42803542 polypeptide=Potri.005G011000.1.p locus=Potri.005G011000 ID=Potri.005G011000.1.v4.1 annot-version=v4.1 MKLSRLNYLSKPFKIPTFTLKPTLTLPILETHLQKCQNIKQFNQILSQMILSGFFKDSFAASRLLKFSTELPFININQSYQIFSHIENPNGFICNTMMKG YMQRNSPCKAIWVYKFMLESNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLKVGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLA GYVLVGNVEEAKDVYDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNANGIMVDEVVVLSVLSACS RLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQD RFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMN GLVDKSLKTFSEMKEHGVTPNEITFVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDVSTWGALLGAC KKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVLEVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLE GYAPDTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLISKAFNREIVVRDRHRFHHFKQGSCSCMDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G011000 [exp]	0	1
AT4G15850		ATRH1	RNA helicase 1 (.1)		Potri.004G158000 [exp]	1.41	0.8702	ATRH1.1
AT1G71490			Tetratricopeptide repeat (TPR)...		Potri.019G074700 [exp]	6.32	0.8045
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227600 [exp]	7.21	0.8295
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.006G033800 [exp]	8.24	0.7791	Pt-UBP5.3
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Potri.006G049900 [exp]	8.48	0.7924
AT1G10910		EMB3103	EMBRYO DEFECTIVE 3103, Pentatr...		Potri.003G019000 [exp]	9.94	0.8290
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Potri.001G044700 [exp]	11.00	0.7952
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Potri.006G070800 [exp]	12.96	0.7630
AT1G79560		EMB36, EMB156, ...	EMBRYO DEFECTIVE 36, EMBRYO DE...		Potri.010G171300 [exp]	13.26	0.8227
AT2G41020			WW domain-containing protein (...		Potri.006G032200 [exp]	15.55	0.7719

Compare expression of checked genes

Potri.005G011000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.