Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56580 191 / 5e-63 SVB SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) AT1G09310 191 / 2e-62 Protein of unknown function, DUF538 (.1) AT5G46230 137 / 5e-42 Protein of unknown function, DUF538 (.1) AT4G24130 137 / 8e-42 Protein of unknown function, DUF538 (.1) AT5G49600 118 / 3e-34 Protein of unknown function, DUF538 (.1) AT1G30020 102 / 5e-28 Protein of unknown function, DUF538 (.1) AT1G02816 46 / 2e-06 Protein of unknown function, DUF538 (.1) AT5G19860 45 / 5e-06 Protein of unknown function, DUF538 (.1) AT4G02370 44 / 1e-05 Protein of unknown function, DUF538 (.1) AT5G37070 41 / 0.0001 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G007000 [exp] 265 / 3e-92 AT1G56580 176 / 5e-57 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.004G064700 [exp] 171 / 5e-55 AT5G46230 184 / 4e-61 Protein of unknown function, DUF538 (.1) Potri.003G146400 [exp] 150 / 9e-47 AT4G24130 211 / 5e-71 Protein of unknown function, DUF538 (.1) Potri.001G084200 [exp] 148 / 5e-46 AT4G24130 208 / 5e-70 Protein of unknown function, DUF538 (.1) Potri.010G149100 [exp] 136 / 5e-41 AT5G49600 152 / 3e-47 Protein of unknown function, DUF538 (.1) Potri.004G056700 [exp] 117 / 3e-34 AT1G09310 99 / 4e-27 Protein of unknown function, DUF538 (.1) Potri.004G084600 [exp] 109 / 6e-31 AT1G56580 96 / 9e-26 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.017G133300 [exp] 107 / 2e-30 AT1G56580 69 / 1e-15 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 44 / 1e-05 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018630 [exp] 211 / 4e-70 AT1G09310 195 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10039866 [exp] 208 / 5e-69 AT1G09310 196 / 5e-64 Protein of unknown function, DUF538 (.1) Lus10031428 [exp] 204 / 3e-68 AT1G09310 185 / 2e-60 Protein of unknown function, DUF538 (.1) Lus10010904 [exp] 204 / 4e-68 AT1G09310 185 / 1e-60 Protein of unknown function, DUF538 (.1) Lus10017330 [exp] 132 / 1e-39 AT4G24130 209 / 3e-70 Protein of unknown function, DUF538 (.1) Lus10001674 [exp] 130 / 9e-39 AT4G24130 212 / 2e-71 Protein of unknown function, DUF538 (.1) Lus10017655 [exp] 124 / 1e-36 AT1G56580 115 / 1e-33 SMALLER WITH VARIABLE BRANCHES, Protein of unknown function, DUF538 (.1) Lus10000355 [exp] 120 / 2e-35 AT5G46230 117 / 1e-34 Protein of unknown function, DUF538 (.1) Lus10037804 [exp] 114 / 2e-32 AT5G49600 144 / 2e-44 Protein of unknown function, DUF538 (.1) Lus10017087 [exp] 114 / 4e-31 AT5G49600 145 / 3e-43 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.005G011200.1 pacid=42802512 polypeptide=Potri.005G011200.1.p locus=Potri.005G011200 ID=Potri.005G011200.1.v4.1 annot-version=v4.1 ATGTCTCTTGTCAAAGAAGACATCAAAGCCAAAGCTGAGGTCTACTATGGAGATGAAATGGGAAAAGAGAAATCTCAAGAATTGCTCAGAGAAGTAGGCT TGCCAAATGGTCTTTTGCCCTTGCACGATATTGTAGAGTGCGGGATTGTGAGGGAGACAGGGTTTGTGTGGCTCAAGCAAAAGAAGAGCATAACCCACAA GTTTGAGAAGATTGGCAAGCTCGCTTCCTATGGAACTGAAGTCACAGCTTATGTTGAACAAAACAAGATCAAGAAACTGACTGGTGTGAAGACCAAAGAG CTTTTGCTCTGGGTCACACTGAGTGATATCTATTTGGATGATCCACCAACTGGAAAGATCACTTTCCAGACTCCTACTGGGCTCTACAGGACTTTCCCTG TGTCAGCTTTTGTGGTTGAAGAAAAAGGTAAAGCAGCAACCTCAGCAGCGGCGGCAAAGGATGTCAAGGAAGAGAAGAAGGATGATGTCAAGGGAGTGAA TGGAGCCGTGGAGGTGAAGGAGGCCTAA
AA sequence Show only first row Show all	>Potri.005G011200.1 pacid=42802512 polypeptide=Potri.005G011200.1.p locus=Potri.005G011200 ID=Potri.005G011200.1.v4.1 annot-version=v4.1 MSLVKEDIKAKAEVYYGDEMGKEKSQELLREVGLPNGLLPLHDIVECGIVRETGFVWLKQKKSITHKFEKIGKLASYGTEVTAYVEQNKIKKLTGVKTKE LLLWVTLSDIYLDDPPTGKITFQTPTGLYRTFPVSAFVVEEKGKAATSAAAAKDVKEEKKDDVKGVNGAVEVKEA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56580		SVB	SMALLER WITH VARIABLE BRANCHES...		Potri.005G011200 [exp]	0	1
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.006G126800 [exp]	2.82	0.8608	PAL3,Pt-PAL1.2
AT2G35680			Phosphotyrosine protein phosph...		Potri.001G154700 [exp]	5.65	0.8335
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.010G036200 [exp]	5.74	0.8753
AT4G10150			RING/U-box superfamily protein...		Potri.014G076800 [exp]	6.24	0.8807
AT3G05327			Cyclin family protein (.1)		Potri.005G033600 [exp]	11.48	0.8760
AT5G47870		RAD52-2B, RAD52...	radiation sensitive 51-2, unkn...		Potri.003G158500 [exp]	12.64	0.8455
					Potri.019G009900 [exp]	12.96	0.8435
AT2G46550			unknown protein		Potri.005G071400 [exp]	13.41	0.8624
AT1G14340			RNA-binding (RRM/RBD/RNP motif...		Potri.017G081400 [exp]	14.28	0.7903
AT4G27745			Yippee family putative zinc-bi...		Potri.015G009200 [exp]	16.09	0.8610

Compare expression of checked genes

Potri.005G011200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.