Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09280 773 / 0 unknown protein AT2G40760 92 / 2e-19 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT1G17850 68 / 8e-12 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) AT5G65400 65 / 3e-11 alpha/beta-Hydrolases superfamily protein (.1) AT4G24380 57 / 5e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G059400 [exp] 96 / 1e-20 AT2G40760 553 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.015G029600 [exp] 78 / 5e-15 AT1G17850 528 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Potri.002G102500 [exp] 73 / 3e-14 AT4G24380 334 / 1e-117 unknown protein Potri.006G027000 [exp] 59 / 2e-09 AT4G24380 211 / 4e-68 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008045 [exp] 797 / 0 AT1G09280 748 / 0.0 unknown protein Lus10029020 [exp] 102 / 4e-23 AT2G40760 568 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10041981 [exp] 79 / 5e-15 AT1G17850 503 / 1e-176 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Lus10020946 [exp] 70 / 4e-13 AT4G24380 327 / 1e-114 unknown protein Lus10017986 [exp] 70 / 2e-12 AT1G17850 496 / 7e-174 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Lus10008722 [exp] 67 / 3e-12 AT4G24380 320 / 7e-112 unknown protein Lus10000004 [exp] 43 / 4e-05 AT4G24380 123 / 2e-37 unknown protein Lus10034243 [exp] 44 / 0.0004 AT2G40760 262 / 4e-84 Rhodanese/Cell cycle control phosphatase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03959 [poplar] [flax] FSH1 Serine hydrolase (FSH1) CL0028 [poplar] [flax] PF12368 [poplar] [flax] Rhodanese_C Rhodanase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G011300.1 pacid=42803577 polypeptide=Potri.005G011300.1.p locus=Potri.005G011300 ID=Potri.005G011300.1.v4.1 annot-version=v4.1 ATGGCAGACAGCAACGAGAATCAGCAAGGCAAAGGCAAAGAGCAAGAGCAAGAGCAAGAGCAATATGGTGTCCTGCTTTACTACAAATACACAGAAATCC CTGATCTCAACTCCCTCCTCTCCTTCTACAATTCCAACTGCACTTCCCTCTCCCTCCTTGGCCGTGTCCGCCTCTCTCTCCATGGAGTCAATGTCACTGT TGGTGGCAAGTTGTCTTCATTGGAGAAGCATATTGAAGCTGTGAAAGCTATTAGTTTATTTGAAGGGACTGATTTCAAGCTTGCTTCTTGTCATTTTCCA TTGAATGACAAGGTTGCTCATGAATGTGGCTTCACTTCTCTTTCCATTCGCATTGTCAAGGAATTGGTTACTTTTAGCCCTTATCCTCTTGTTAAAGCAC CGGATGTTTCAAATGCTGGTAGGCATTTGTCCGCTGTGGAGTTCCATTCTGCTCTTCAAAGTGCTGGGAAGCTTGTAGATAAAGAAAGTCTAGCTGATGA TAAAGGTCTTGTTTTATTAGATGCAAGGAATCTGTATGAGACGAGAATTGGGAAGTTTGACATGCCAAATGTGGACACTTTAGATCCTGGAATCAGACAG TATAGTGATCTGCCATCCTGGATAGATGATAATTCTGAACAATTGCGAGGAAAGAATGTCCTGATGTATTGTACTGGAGGAATCAGGTGTGAGATGGCAT CGGCCTATATTAGGTCAAAAGGTGCTGGATTTGAGAATGTGTTTCAGTTGTTTGGTGGAATACAGCGTTATTTAGAACAATTTCCAGATGGTGGTTTTTT CAAAGGAAAGAATTTTGTTTTTGATCACAGGATTTCTGTTGGGAGCTCAGATACAAATATCTTGGGAACCTGCCTTCTCTGTGGCTTATCCTTTGATGAT TACTCTTCACGATGTAGATGCTCATATTGTAGAATGCTAGTATTGGTCTGTGATAGCTGCCGGAAGGAGGAAGCTGTTTATGCTTGCGAGCTGTGCCAAA AACATGGAAAGGTAATTGAGTCAAATGTTGCTGAAAATGGTGAACAGCAAGATATATTGCCTCAAGTTGAGCTCAAAACCATTTCCTCAGATACTATCCT CTCGCCTCAACTTCATGGGGAACAGGGTGCTAGGCCTCCAAGAAAGCTAAGAATCTTGTGCTTGCATGGGTTTCGGCAGAATGCATCTGGTTTTAAAGGA AGAACTGCATCATTAGCCAAGAAACTTAAAAACATTGCTGAGCTTGTCTTTGTTGATGCACCTCATGAGTTGCCTTTCATATACCAGTCATGTGTCTCGG AACTAGAGTGCAGTGATGAATCATCATTTTCATCACAACAAATTCTCCCCCCAACAGAAACTTGCAGGGGAAAGTTTGCCTGGTTGATAGCACCTGATTC CAAAGGAAGCAGTGCAACTGATTGGAAAAAGGCAGATAGTCCATTTGATCCCCTCCAGTACCTGCAGCAAACTGAAGGGTTTGATGTATCATTATCGTAT TTAAAGACAGTATTCTCTCGGGATGGGCCATTTGACGGGATCCTGGGATTTTCACAAGGAGCAGCGATGGCTGCTTTACTTTGTGCACAAAAAGGGAGGC TAAAAGGTGACATTGATTTCAGATTTGCAATTTTGTGTTCTGGGTTCGCTCTTCCATTTGTGGAGATTGAGAGTGGATCGATTAACTGCCCCTCTCTCCA TGTATTCGGTTGTGTTCCAGGCAAGGACAGGCAGATTGCAAACAAAACAAGCAGAGAACTTGCTTCATTATTTGAAGATGGTTGCTCAGTTATTATTGAG CATGATTTTGGTCACATCATTCCTACTCGGACACCATACATTGATGAAATCAAAGGTTTCCTTCAACGCTTTCTGTAA
AA sequence Show only first row Show all	>Potri.005G011300.1 pacid=42803577 polypeptide=Potri.005G011300.1.p locus=Potri.005G011300 ID=Potri.005G011300.1.v4.1 annot-version=v4.1 MADSNENQQGKGKEQEQEQEQYGVLLYYKYTEIPDLNSLLSFYNSNCTSLSLLGRVRLSLHGVNVTVGGKLSSLEKHIEAVKAISLFEGTDFKLASCHFP LNDKVAHECGFTSLSIRIVKELVTFSPYPLVKAPDVSNAGRHLSAVEFHSALQSAGKLVDKESLADDKGLVLLDARNLYETRIGKFDMPNVDTLDPGIRQ YSDLPSWIDDNSEQLRGKNVLMYCTGGIRCEMASAYIRSKGAGFENVFQLFGGIQRYLEQFPDGGFFKGKNFVFDHRISVGSSDTNILGTCLLCGLSFDD YSSRCRCSYCRMLVLVCDSCRKEEAVYACELCQKHGKVIESNVAENGEQQDILPQVELKTISSDTILSPQLHGEQGARPPRKLRILCLHGFRQNASGFKG RTASLAKKLKNIAELVFVDAPHELPFIYQSCVSELECSDESSFSSQQILPPTETCRGKFAWLIAPDSKGSSATDWKKADSPFDPLQYLQQTEGFDVSLSY LKTVFSRDGPFDGILGFSQGAAMAALLCAQKGRLKGDIDFRFAILCSGFALPFVEIESGSINCPSLHVFGCVPGKDRQIANKTSRELASLFEDGCSVIIE HDFGHIIPTRTPYIDEIKGFLQRFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09280			unknown protein		Potri.005G011300 [exp]	0	1
AT3G11220		ELO1	ELONGATA 1, Paxneb protein-rel...		Potri.010G189500 [exp]	6.92	0.7384
AT2G34040			Apoptosis inhibitory protein 5...		Potri.011G062500 [exp]	8.48	0.7205
AT1G24310			unknown protein		Potri.010G059100 [exp]	11.18	0.6165
AT3G60830		ATARP7	actin-related protein 7 (.1)		Potri.009G060200 [exp]	15.19	0.6246	ARP902,Pt-ARP7.2
AT2G13600			Pentatricopeptide repeat (PPR)...		Potri.007G104700 [exp]	17.14	0.7229
AT1G51130			Nse4, component of Smc5/6 DNA ...		Potri.003G212600 [exp]	17.66	0.6539
AT4G11160			Translation initiation factor ...		Potri.001G095500 [exp]	21.67	0.6892
AT2G37690			phosphoribosylaminoimidazole c...		Potri.019G012300 [exp]	24.12	0.6778	Pt-PURE.2
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.006G227300 [exp]	24.33	0.6634
AT1G09800			Pseudouridine synthase family ...		Potri.003G008500 [exp]	27.20	0.6566

Compare expression of checked genes

Potri.005G011300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.