Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74170 439 / 2e-135 AtRLP13 receptor like protein 13 (.1) AT1G74190 438 / 3e-135 AtRLP15 receptor like protein 15 (.1) AT1G07390 439 / 6e-135 AtRLP1 receptor like protein 1 (.1.2.3) AT1G58190 416 / 1e-126 AtRLP9 receptor like protein 9 (.1.2) AT2G25470 405 / 2e-123 AtRLP21 receptor like protein 21 (.1) AT3G53240 399 / 8e-122 AtRLP45 receptor like protein 45 (.1) AT1G74180 398 / 1e-120 AtRLP14 receptor like protein 14 (.1) AT5G49290 377 / 2e-113 ATRLP56 receptor like protein 56 (.1) AT1G54470 296 / 4e-84 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT4G20140 243 / 2e-65 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007900 [exp] 2042 / 0 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.005G009700 [exp] 2020 / 0 AT1G74190 453 / 4e-141 receptor like protein 15 (.1) Potri.005G007600 [exp] 1483 / 0 AT1G58190 439 / 2e-136 receptor like protein 9 (.1.2) Potri.017G018700 [exp] 1392 / 0 AT1G58190 481 / 1e-152 receptor like protein 9 (.1.2) Potri.005G013100 [exp] 1343 / 0 AT1G74190 452 / 6e-143 receptor like protein 15 (.1) Potri.005G013400 [exp] 1296 / 0 AT1G74190 412 / 4e-129 receptor like protein 15 (.1) Potri.003G026308 [exp] 1004 / 0 AT1G74190 423 / 1e-130 receptor like protein 15 (.1) Potri.005G013200 [exp] 959 / 0 AT1G58190 453 / 1e-142 receptor like protein 9 (.1.2) Potri.003G026914 [exp] 929 / 0 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 429 / 7e-133 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 389 / 4e-117 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10016384 [exp] 268 / 3e-74 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10011064 [exp] 265 / 3e-73 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10026415 [exp] 265 / 7e-73 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10016340 [exp] 263 / 9e-73 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10042239 [exp] 264 / 1e-72 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10016342 [exp] 262 / 2e-72 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10006825 [exp] 258 / 1e-70 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10006948 [exp] 253 / 1e-70 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G011600.2 pacid=42802540 polypeptide=Potri.005G011600.2.p locus=Potri.005G011600 ID=Potri.005G011600.2.v4.1 annot-version=v4.1 ATGATGATGAAAAAAATGGGGGCTTGGATGTTGCTAGCATTATTGACTTTGGTTGGCGACTGGTGTGGTCGTTGTTATGGGTGTTTGGAGGAAGAGAGAA TTGGTCTCTTAGAGATCAAACCTTTGATCGACCCAAACAGCATTTACATGAGAGATTGGGTGGAGTACAGTAGTAATTGTTGTGAGTGGCCTAGGATCGA GTGTGATAACACTACAAGGCGAGTGATCCGACTCTCTCTTTTTGAAGCAAGGGATCAGAGTTTGGGTTGGGTTCTCAACGCATCTTTGTTTCTGCCTTTT AAGGAACTGCAAAGTCTTGATTTGGGTTATAATGGACTGGTTGGTTGCTCTGAGAATCAAGGCTTCGAAGTCCTATCATCAAAACTGAGGAAACTGGAGG TACTTGACCTAAGTCTGAACCGATTTAATAATGATAAAGGCATTTTATCATGCTTCAATGGGCTTTCCGCTCTCAAGTCTTTGGATCTGTCAGCCAATCA GCTGACAGGGTCAGGTCTCAAAGTCTTGTCATCAAGGTTGAAAAGGCTGGAGAACCTTGACCTGAGTGGGAATCAATGCAACGACAGCATCTTTTCATCT ATAACTGGGTTTTCATCTATCAAGTCTTTGGATCTGTCATTCAATGAGGTGACAGGATCAGGTCTCAAAGTCTTGTCATCAAGGTTGAAAAGGCTGGAGA ACCTTGACCTGAGTGACAATCAATGCAACGATAGCATTTTTTCATCTCTAAGTGGGTTTTCATCTCTCAAGTCTTTGGATCTGTCATACAATGAGGTGAC AGGATCAGGTCTCAAAGTCTTGTCATCAAGGTTGAAAAGGCTGGAGAACCTTGACCTGAGTTACAATCAATGCAATGATAGCATCTTTTCATCTCTAACT GGGTTTTCATCCCTCAAGTATTTAAATCTATCAAGGAATCAGCTGACAGGATCATCTACTGGTATCAATAGTTTTCAAGTGCTAGCTTCGGGGTTGAGGA ATTTGGAGGAACTTCATTTAAGTGACAATAAATTTAACGACAGTATTTTATCATCTCTCAGTGGTTTTTCAACTCTCAAATCTCTACATCTATCAAACAA TAAGTTCACAGGAACAATTGGTCTCAAAGGTTTAAGGAATTTGGAGGAACTTTATCTGGGTTTCAATAAATTTAACAACAGCATTTTATCATCTCTCAGT GGATTTTCAACTCTCAAATCTCTAGATCTATCAGGCAACATGTTCACAGGATCAACTGGTCTCTATGGTTTAAGGAATTTAGAAACCTTGAATCTGGAAT ACACTGACTTCAAGGAAAGCATTTTGATAGAGTCATTGGGAGCGTTGCCATCCCTCAAGACCTTATATGCAAGTTATAGTAAATTTAAACACTTTGGGAA AGGGTTGTCTAATTCGTCTAGCCTTGAAGAAGTGTTCCTATATTATTCTTATCTCCCAGCAAGCTTTCTGAGGAACATAGGACACTTGTCTACTCTTAAA GTCCTATCCTTGGCCGGAGTTGACTTCAGTAGCACCCTACCTGCTGAAGGCTGGTGTGAACTGAAGAATCTTGAACATCTATTTCTCTCACGAAACAATC TAAAGGGCGTGCTCCCTCCTTGTTTGGGAAATCTATCATCTCTACGATCCTTGGATTTATCTGACAACCAATTGGAGGGGAATATTGCCCTTAGTCACCT TTCCCATCTTCCGCAGCTTGAATACCTCTCAGTTTCATATAACCACTTTCAAGTTCCAAAATCATTTGGTTCATTTATGAACCTCTCCAACCTCAAGTTC TTTGCATGCGATAACAATGAGCTAATACCTGCACCCAGTTTTCAGCCTTTAGTTCCAAAGTTCCAGCTTCTTTTCTTTAGTGCTTCAAACTGTACTTCAA AACCACACGAGGCTGGATTTCCAAACTTCCTCCAGAGCCAATATGATCTTGTGGTTGTTGATCTATCCCATAACAAATTCGTTGGAGAACCTTTCCCATC TTGGCTGTTTGAGAATAATACAAAGTTAAATCGACTATATTTGAGAGACACCTCATTTATAGGTCCTTTGCAGCTGCCACAACATCCAACACCCAACCTT CAGACAGTAGATATGTCTGGCAACAGCATACATGGTCAAATTGCAAGGAACATATGTTCGATTTTTCCACGTTTGAAGAACTTCATGATGGCTAACAACA GCCTCACAGGTTGCATTCCTCCTTGTTTTGGGAATATGAGCTCTCTCGGATACTTGGATCTTTCCAACAATCACATGTCTTGTGAACTGCTTGAGCATAA TTTTCCAACAGTAGGCTCCTCGTTGTGGTTCTTAAAGTTGTCCAATAACAATTTCAAAGGGCGATTACCACTCTCTGTGTTCAACATGACTGGCCTACTT TACCTCTTTCTCGATGGAAACAAACTTGCTGGACAAGTATCTGATACCTTTTCTCTTGCATCATCATTTTTGTGGTTTGATATCAGTAACAATATTCTGT CAGGCATGCTTCCAAGGGGAATAGGGAACTCTTCACTAAACAGCTTGCAGGGAATTGACTTGTCCAGAAATCATTTTGAAGGTACCATTCCAATAGAATA TTTCAATTCTTCTGGGCTTGAATTTTTAGATCTTTCTGAAAACAATCTGTCTGGGTCATTACCGTTGGGCTTCAATGCATTAGATTTACGCTATGTCCAC CTATACGGAAATAGATTGAGCGGTCCACTGCCATTTGATTTTTATAATCTCTCTTCGTTGGCGACATTAGATCTCGGCGATAACAACTTAACTGGGCCCA TTCCAAATTGGATTGATACCCTTTCGGAATTGAGCATTTTTGTTCTCAAATCTAATCAATTCAATGGGAAACTTCCTCATCAGTTATGCAAGTTAAGGAA ATTAAGCATATTGGATCTTTCAGAAAATAATTTTTCTGGTCTGTTACCCTCATGTTTGAGAAATTTAAATTTTACGGCATCGGATGAAAAAACTTTAGAT GCCCCTCGTACGGGATCGGATTATGGAAGCGGGGAAGAAATATTTGCATCCATAGGGGGAAGAGGATTTTCTCTTTATGACAATATTTTATGGGCAGAGA TCAGTGTAAAAATATCTGTAGAGCTTACAGCAAAGAAAAATTTCTACACTTACGAAGGCGATATCCTTCGTTACATGTCTGTTATGGATCTTTCTTGTAA CAGATTCAATGGAGAAATTCCAACAGAATGGGGAAACTTAAGTGGGATATATTCTCTAAATCTGTCACAAAATAATCTCACTGGATTGATCCCTTCATCC TTCTTCAATCTGAAGCAGATAGAGAGCTTGGATCTTTCTCACAACAATTTGAATGGGAGAATTCCTGCACAACTCGTTGAACTGACCTTTCTAGAAGTTT TCAACGTGTCGTACAATAATTTGTCAGGAAGAACACCGGAGATGAAAAATCAATTTGCTACCTTTGATGAGAGCAGTTATAAGGGGAATCCTCTTCTTTG TGGACCTCCATTGCAAAACAGTTGCGACAAAACAGAATCACCATCAGCGAGAGTGCCTAACGATTTCAATGGAGATGGTGGCTTCATAGACATGGACAGT TTCTATGCCAGCTTTGGTGTGTGTTACATAATTGTGGTGTTGACAATTGCAGCAGTACTGTGCATAAATCCGCATTGGCGACGCAGGTGGTTTTACTTCA TTGAAGAATGCATTGACACTTGCTGCTGCTTTCTGGCTATTAACTTTCCCAAGTTGTCCAGATTCAGAAGGTGA
AA sequence Show only first row Show all	>Potri.005G011600.2 pacid=42802540 polypeptide=Potri.005G011600.2.p locus=Potri.005G011600 ID=Potri.005G011600.2.v4.1 annot-version=v4.1 MMMKKMGAWMLLALLTLVGDWCGRCYGCLEEERIGLLEIKPLIDPNSIYMRDWVEYSSNCCEWPRIECDNTTRRVIRLSLFEARDQSLGWVLNASLFLPF KELQSLDLGYNGLVGCSENQGFEVLSSKLRKLEVLDLSLNRFNNDKGILSCFNGLSALKSLDLSANQLTGSGLKVLSSRLKRLENLDLSGNQCNDSIFSS ITGFSSIKSLDLSFNEVTGSGLKVLSSRLKRLENLDLSDNQCNDSIFSSLSGFSSLKSLDLSYNEVTGSGLKVLSSRLKRLENLDLSYNQCNDSIFSSLT GFSSLKYLNLSRNQLTGSSTGINSFQVLASGLRNLEELHLSDNKFNDSILSSLSGFSTLKSLHLSNNKFTGTIGLKGLRNLEELYLGFNKFNNSILSSLS GFSTLKSLDLSGNMFTGSTGLYGLRNLETLNLEYTDFKESILIESLGALPSLKTLYASYSKFKHFGKGLSNSSSLEEVFLYYSYLPASFLRNIGHLSTLK VLSLAGVDFSSTLPAEGWCELKNLEHLFLSRNNLKGVLPPCLGNLSSLRSLDLSDNQLEGNIALSHLSHLPQLEYLSVSYNHFQVPKSFGSFMNLSNLKF FACDNNELIPAPSFQPLVPKFQLLFFSASNCTSKPHEAGFPNFLQSQYDLVVVDLSHNKFVGEPFPSWLFENNTKLNRLYLRDTSFIGPLQLPQHPTPNL QTVDMSGNSIHGQIARNICSIFPRLKNFMMANNSLTGCIPPCFGNMSSLGYLDLSNNHMSCELLEHNFPTVGSSLWFLKLSNNNFKGRLPLSVFNMTGLL YLFLDGNKLAGQVSDTFSLASSFLWFDISNNILSGMLPRGIGNSSLNSLQGIDLSRNHFEGTIPIEYFNSSGLEFLDLSENNLSGSLPLGFNALDLRYVH LYGNRLSGPLPFDFYNLSSLATLDLGDNNLTGPIPNWIDTLSELSIFVLKSNQFNGKLPHQLCKLRKLSILDLSENNFSGLLPSCLRNLNFTASDEKTLD APRTGSDYGSGEEIFASIGGRGFSLYDNILWAEISVKISVELTAKKNFYTYEGDILRYMSVMDLSCNRFNGEIPTEWGNLSGIYSLNLSQNNLTGLIPSS FFNLKQIESLDLSHNNLNGRIPAQLVELTFLEVFNVSYNNLSGRTPEMKNQFATFDESSYKGNPLLCGPPLQNSCDKTESPSARVPNDFNGDGGFIDMDS FYASFGVCYIIVVLTIAAVLCINPHWRRRWFYFIEECIDTCCCFLAINFPKLSRFRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G011600 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.011G055000 [exp]	2.44	0.9894
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G148000 [exp]	2.82	0.9872
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	5.00	0.9840
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G124400 [exp]	6.48	0.9782
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117927 [exp]	8.12	0.9706
AT1G30760			FAD-binding Berberine family p...		Potri.001G462700 [exp]	9.79	0.9778
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G020600 [exp]	10.67	0.9614
AT1G76980			unknown protein		Potri.005G064700 [exp]	10.77	0.9524
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G141450 [exp]	10.81	0.9740
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.017G003101 [exp]	13.52	0.9312

Compare expression of checked genes

Potri.005G011600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.