Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09250 109 / 1e-29 bHLH bHLH149, AIF4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G17100 97 / 9e-25 bHLH bHLH147, AIF3 sequence-specific DNA binding transcription factors (.1.2) AT3G05800 92 / 8e-23 bHLH bHLH150, AIF1 AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 (.1) AT3G06590 91 / 1e-22 bHLH bHLH148, AIF2 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT2G47270 44 / 5e-06 bHLH bHLH151, UPB1 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) AT1G09530 44 / 5e-05 bHLH PIF3, POC1, PAP3 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) AT2G43060 42 / 9e-05 bHLH AtIBH1, bHLH158 ILI1 binding bHLH 1 (.1) AT3G59060 42 / 0.0001 bHLH PIF5, PIL6 PHYTOCHROME-INTERACTING FACTOR 5, phytochrome interacting factor 3-like 6 (.1.2.3.4) AT1G66470 42 / 0.0001 bHLH AtRHD6, RHD6, bHLH083 ROOT HAIR DEFECTIVE6 (.1) AT2G43010 42 / 0.0002 bHLH SRL2, PIF4, AtPIF4 phytochrome interacting factor 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G007700 [exp] 222 / 6e-74 AT1G09250 95 / 4e-24 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G103500 [exp] 77 / 5e-17 AT3G17100 174 / 2e-54 sequence-specific DNA binding transcription factors (.1.2) Potri.010G147400 [exp] 74 / 4e-16 AT3G17100 174 / 3e-54 sequence-specific DNA binding transcription factors (.1.2) Potri.005G201500 [exp] 47 / 7e-07 AT3G58850 82 / 4e-21 phy rapidly regulated 2 (.1) Potri.002G193300 [exp] 46 / 2e-06 AT2G47270 79 / 5e-20 UPBEAT1, sequence-specific DNA binding transcription factors;transcription regulators (.1) Potri.002G060100 [exp] 43 / 2e-05 AT3G58850 80 / 4e-20 phy rapidly regulated 2 (.1) Potri.005G060900 [exp] 42 / 8e-05 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G001300 [exp] 42 / 0.0001 AT1G09530 224 / 6e-65 PHOTOCURRENT 1, PHYTOCHROME-ASSOCIATED PROTEIN 3, phytochrome interacting factor 3 (.1.2) Potri.004G088900 [exp] 42 / 0.0001 AT5G37800 199 / 7e-62 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017065 [exp] 74 / 4e-16 AT3G06590 171 / 1e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10037783 [exp] 74 / 5e-16 AT3G06590 172 / 9e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10031425 [exp] 59 / 2e-11 AT1G09250 51 / 7e-09 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10026730 [exp] 41 / 0.0001 AT2G43060 97 / 4e-26 ILI1 binding bHLH 1 (.1) Lus10017634 [exp] 41 / 0.0003 AT1G66470 171 / 2e-51 ROOT HAIR DEFECTIVE6 (.1) Lus10010907 [exp] 40 / 0.0006 AT3G06590 81 / 8e-19 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10033592 [exp] 40 / 0.0006 AT1G66470 174 / 5e-53 ROOT HAIR DEFECTIVE6 (.1) Lus10033488 [exp] 40 / 0.0006 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G012400.1 pacid=42802787 polypeptide=Potri.005G012400.1.p locus=Potri.005G012400 ID=Potri.005G012400.1.v4.1 annot-version=v4.1 ATGGCAAGCAACCAATTAAATTGCGACATGTCATCCCAACAAGAACAAAACCAACGAAGAAAGAAACGGAGAAAATTGACTCATGAAACGACAGAGAGTC ACATTCAAAATGACAGCAAAAACCAGCTAACAGTGAGGTGGCGAACTGAAGCAGAGCGGCGGATCTATTCGTCGAAGCTTCTTGAAGCTCTCCGTCGGTC AAGCCGGACATCTTCTCATCCTGGGAAGAGGACTCGAGAAGTCCGAGAAACCGCTAACAGAGTCCTCGCGGTGGCTGCTAGAGGAAGAACTCAGTGGAGC CGCGCGATTCTCGCGAAACGCGCGCGGTTGTTGAGAGTGAGGAAGGTGAAGAAACAGAAATTAAACAGTGATCGTCGGTTACAGGAGAGAGAGAAGAGGA GGAAGTTACCGGCGGTGGAGAAGAAAGTGAAGGTTTTGAGCCGGCTAGTACCTGGTTGCCGGAAAGTTTCGTTTGTGAATCTTTTAGAGGAAGCGAGTGA TTATATTGCGGCTTTGGAGATGCAAATTAAGGTTATGACCACTCTAAGTGAAATTCTCACCGCCGCTGGCGGCGAAGTAGGCGGTGGCGCGGGAGTTGAT GGCGGCTTGTCAAGTTGA
AA sequence Show only first row Show all	>Potri.005G012400.1 pacid=42802787 polypeptide=Potri.005G012400.1.p locus=Potri.005G012400 ID=Potri.005G012400.1.v4.1 annot-version=v4.1 MASNQLNCDMSSQQEQNQRRKKRRKLTHETTESHIQNDSKNQLTVRWRTEAERRIYSSKLLEALRRSSRTSSHPGKRTREVRETANRVLAVAARGRTQWS RAILAKRARLLRVRKVKKQKLNSDRRLQEREKRRKLPAVEKKVKVLSRLVPGCRKVSFVNLLEEASDYIAALEMQIKVMTTLSEILTAAGGEVGGGAGVD GGLSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09250	bHLH	bHLH149, AIF4	basic helix-loop-helix (bHLH) ...		Potri.005G012400 [exp]	0	1
AT3G22970			Protein of unknown function (D...		Potri.010G080600 [exp]	3.16	0.7837
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.008G112200 [exp]	3.46	0.7452
AT3G61980			serine protease inhibitor, Kaz...		Potri.014G108700 [exp]	3.60	0.7840
AT2G24190		SDR2	short-chain dehydrogenase/redu...		Potri.009G158200 [exp]	4.89	0.7247
AT1G80870			Protein kinase superfamily pro...		Potri.001G043700 [exp]	7.07	0.7323
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	10.90	0.7251
AT5G49610			F-box family protein (.1)		Potri.011G004800 [exp]	10.95	0.6912
AT4G32860			unknown protein		Potri.006G236700 [exp]	12.00	0.6605
AT4G39900			unknown protein		Potri.008G145000 [exp]	16.09	0.6584
AT1G28270		RALFL4	ralf-like 4 (.1)		Potri.004G045000 [exp]	20.78	0.7281

Compare expression of checked genes

Potri.005G012400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.