Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29760 542 / 0 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 539 / 0 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 534 / 0 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 528 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 516 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 488 / 1e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 488 / 4e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 480 / 6e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G12770 481 / 6e-162 MEF22 mitochondrial editing factor 22 (.1) AT4G14820 478 / 2e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G031600 [exp] 570 / 0 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 568 / 0 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 555 / 0 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 547 / 0 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 546 / 0 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 537 / 0 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G044700 [exp] 535 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G237000 [exp] 527 / 0 AT5G66520 544 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G191200 [exp] 520 / 8e-178 AT5G48910 852 / 0.0 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031423 [exp] 852 / 0 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 848 / 0 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010908 [exp] 634 / 0 AT5G48910 410 / 5e-135 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 546 / 0 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 546 / 0 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 533 / 0 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033026 [exp] 531 / 2e-180 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 522 / 2e-178 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 525 / 5e-178 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 518 / 8e-177 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.005G012600.2 pacid=42804593 polypeptide=Potri.005G012600.2.p locus=Potri.005G012600 ID=Potri.005G012600.2.v4.1 annot-version=v4.1 ATGTCCACAACCACAAATCTTCCCTATCATCTTGCTTCCAAAGACTTCTCAACAGAAAACAAATTCACATCCCAACTTTCCCAGAAAACAATCTTAGATC TCTTGAACACCAAAAGCAGCACTTCACTTCATCATCTCAAGCAAGTCCATGCTGTGGCATTAAGGACAGGCCATTTTCAAGACCACTATGTATCTGGTAC CTTAGTGAAATGTTATGCAAATCCTCATTTTAGCAACTTGAATTTTGCCTTAAAGGTCTTTGAATATGTCCCAAACCCTAATGTTTTTGTGTTTAACATT ATCATCAAAGGTTGTTTGCAGAACAATGAGCCATGTAAGGCCATATGGTGTTATTACAACATGATGGCTGCACATGCAAGGCCTAATAAGTTTACTTATC CGACATTGTTTAAGGCTTGCACGGCTGCAGAAGCAGCTGAAGAAGGGGTGCAGGTGCATGCTCATGTGATCAAACAAGGACTTAGTGGAGATGTGCATAT AAGAAGTGCTGGGATCCAGATGTATGGAAGTTTTGGTGAAGTAGAGGGGGCAAGGAGAATGCTAGGCGAGGATGGGAACTCAGATGTTATTTGCTTTAAC GCAATGATTGATGGGTACTTGAAGTGTGGAGAGGTGGAAGCAGCTAAGGAATTGTTTTGGAGCATGGAGGATAAGAATGTTGGCTCTTGGAATGTGATGG TCAGTGGTATGGCAAAATGTGGCATGATTGAAGAAGCAAGAGAGTTGTTTAATGAGATGAAAGAAAAGAATGAGATTTCTTGGAGTGCTATGATTGATGG TTATATCAAAGGAGGGTATTACAAGGAAGCTTTGGAGGTTTTTAATGTGATGCAAAGAGAGGAAATTAGGCCTAGGAAATTTGTTTTGTCTAGTGTGCTA GCTGCTTGTGCTAATTTGGGGGCTCTTGATCAAGGAAGATGGATTCATGCTTATGTGAATAATAATTCAAACTCATTTGATGCTGTTTTGGGTACTGCTT TGGTGGATATGTATGCGAAATGCGGGAGGCTTGATATGGCATGGGATGTTTTTGAGAAGATGGAAAAGAAAGAGGTTTTCACTTGGAATGCTATGATTTG TGGGCTAGGTATGCATGGTAGAGCAGAGGATGCAATTGAGCTTTTCTTTAAGATGCAAAAACAGAAGTTTAGGCCAAATGGGATAACTCTTTTGGGTGTC CTAAGTGCTTGTGCTCATTCAGGAATGGTAGATGAGGGTTTAAGGATTTTTAATTCCATGGAGGAAGTGTATGGTATAGAGCCTGGGATGGAGCATTATG GGTGTGTAGTTGATCTCCTAGGAAGAGCAGGGCTCTTAGGAGAGGCAGAAGAGGTTATGTATTCAATGCCAATGGAACCCAGTGCTGCTGTTTGGGGAGC ACTTTTAGGGGCTTGTAGGAAACATGGAGATGTAGAATTAGGTGAGAGAGTAGGGAAGATTTTACTAGAATTGGAACCTCAAAATAGTGGTAGATATGCT CTGTTATCAAACATCTATGCAAGGGCTGGGAGATGGGATGATGTAGCAAATGTGAGGAAACTAATGAAGGAAAGAGGAGTCAAGACCAGCACCGGAATTA GCATGATTGACTTTGATGGTGTTGTCCATGAATTCAAAATGGGAGATGGATCGCATCCGCAAATGAAGAATATCTATTTGATGTTGAAAAATATGATTAA GAGGCTAAAGATGGAAGGTTTTTCACCAAATACCTCTCAAGTTTTATTTGATATTGAAGAGGAAGAGAAGGAAGCTGAACTGCAGTACCACAGTGAAAAA CTTGCAATTGCTTTCGGATTGATTAACACGAAACCAGGAACAACTATCCATGTAGTGAAGAATTTAAGGATGTGTGAGGACTGTCATTCTGCCTTCAAGC TAATCTCTCAAGTCTATGATCGGGAGATAATCGTGAGGGACCGCGCTCGCTACCATCATTTCAAGACTGGGACATGTTCATGCAAGGATTTTTGGTGA
AA sequence Show only first row Show all	>Potri.005G012600.2 pacid=42804593 polypeptide=Potri.005G012600.2.p locus=Potri.005G012600 ID=Potri.005G012600.2.v4.1 annot-version=v4.1 MSTTTNLPYHLASKDFSTENKFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNI IIKGCLQNNEPCKAIWCYYNMMAAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFN AMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVL AACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGV LSACAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKHGDVELGERVGKILLELEPQNSGRYA LLSNIYARAGRWDDVANVRKLMKERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLFDIEEEEKEAELQYHSEK LAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREIIVRDRARYHHFKTGTCSCKDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G012600 [exp]	0	1
AT3G02450			cell division protein ftsH, pu...		Potri.004G106500 [exp]	3.16	0.9707
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.003G123600 [exp]	4.24	0.9669
AT3G29185			Domain of unknown function (DU...		Potri.004G120900 [exp]	5.29	0.9714
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Potri.006G005500 [exp]	5.65	0.9693
AT4G02920			unknown protein		Potri.002G215800 [exp]	8.00	0.9614
AT1G14270			CAAX amino terminal protease f...		Potri.008G147600 [exp]	9.94	0.9649
AT5G27290			unknown protein		Potri.013G029000 [exp]	10.24	0.9554
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	10.81	0.9698
AT3G05410			Photosystem II reaction center...		Potri.005G027100 [exp]	14.83	0.9599
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.008G172100 [exp]	15.65	0.9650	RNP1.2

Compare expression of checked genes

Potri.005G012600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.