Plant FIBer expression Database

Potri.005G012700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G26805 42 / 6e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G012700.1 pacid=42804267 polypeptide=Potri.005G012700.1.p locus=Potri.005G012700 ID=Potri.005G012700.1.v4.1 annot-version=v4.1
ATGGAAAAAACTAGGTATTACCACTTCCTCCTCACAAAATCCGAAGAGGAGGAGCGACAAAAGGTACATGGTGCTGGTCCTTGGCCCCTGAATTTTGATG
TGGTAGAAATAAGGAAAAATAGCTGTGGTGATCATCATCCCCTTGGAACCTTGCCGCTTTTTCCATGGAAGCTCAAAGTCGAATTACCACTCAATCAAAT
AGGAGGCTATGGTCCTATTGAGCTAAGTGCTGGACAGGTTTTTGACCATGTTCTTAAGTATTGGGATGCAGGAACTGTGTCCCAATTGATTAGTCATGAA
CAAGAACAAATCCCTATCGTTGTGCAAGATTTGGATTCCGGCGTGAAGCATGATATATATCTGGTCAGGTCGAAGGAAGGCGGCGTTGGTGGTGAAGAAA
AATACAAGATTCATCTTCACTGGAAGAAGAAGAATGTCAAGAAGCAAGGTGACAAGGATACTTTGTCAATTGGCATGTATTGGAATATTAGTTCTTCTTG
TTTATGTTTATCTGTTTTGGATGGTCCATGTTGA
AA sequence
>Potri.005G012700.1 pacid=42804267 polypeptide=Potri.005G012700.1.p locus=Potri.005G012700 ID=Potri.005G012700.1.v4.1 annot-version=v4.1
MEKTRYYHFLLTKSEEEERQKVHGAGPWPLNFDVVEIRKNSCGDHHPLGTLPLFPWKLKVELPLNQIGGYGPIELSAGQVFDHVLKYWDAGTVSQLISHE
QEQIPIVVQDLDSGVKHDIYLVRSKEGGVGGEEKYKIHLHWKKKNVKKQGDKDTLSIGMYWNISSSCLCLSVLDGPC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Download tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G26805 unknown protein Potri.005G012700
[exp]
0 1
AT4G23140 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-li... Potri.004G028350
[exp]
1.41 0.7905
AT4G18770 MYB ATMYB98 myb domain protein 98 (.1) Potri.005G118500
[exp]
5.47 0.6691
Potri.018G003201
[exp]
31.43 0.6711
AT2G32235 unknown protein Potri.004G028100
[exp]
43.71 0.6566
AT3G18650 MADS AGL103 AGAMOUS-like 103 (.1) Potri.010G238900
[exp]
45.69 0.6459
AT2G15530 RING/U-box superfamily protein... Potri.005G055667
[exp]
51.16 0.6318
AT5G56320 ATHEXPALPHA1.5,... EXPANSIN 14, expansin A14 (.1) Potri.003G223501
[exp]
67.80 0.6317
Potri.004G063101
[exp]
69.57 0.6317
Potri.010G212850
[exp]
74.16 0.6309

Potri.005G012700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.