Plant FIBer expression Database

Potri.005G012900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G26820 784 / 0 RTS3, MAR1, ATIREG3 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
AT5G03570 85 / 4e-17 FPN2, ATIREG2 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2)
AT2G38460 79 / 2e-15 FPN1, ATIREG1 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G128600
[exp]
98 / 2e-21 AT5G03570 610 / 0.0 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2)
Potri.016G128500
[exp]
93 / 9e-20 AT5G03570 588 / 0.0 FERROPORTIN 2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, iron regulated 2 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031421
[exp]
738 / 0 AT5G26820 669 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Lus10010912
[exp]
718 / 0 AT5G26820 648 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Lus10029841
[exp]
715 / 0 AT5G26820 673 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Lus10020698
[exp]
705 / 0 AT5G26820 657 / 0.0 MULTIPLE ANTIBIOTIC RESISTANCE 1, IRON REGULATED 3, iron-regulated protein 3 (.1)
Lus10001263
[exp]
89 / 3e-18 AT2G38460 602 / 0.0 FERROPORTIN 1, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 1, iron regulated 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0015 MFS PF06963 FPN1 Ferroportin1 (FPN1)
Representative CDS sequence
>Potri.005G012900.2 pacid=42805274 polypeptide=Potri.005G012900.2.p locus=Potri.005G012900 ID=Potri.005G012900.2.v4.1 annot-version=v4.1
ATGGCTATGGTCACAGTTTCACAGTCTTTCAATTTTCATGGATTCTTTGTTAGAAAAGCCTCTTTATTGCCATCATCTGCTTCGAGAGTTCGCTATAGCA
TCAATGATCGAAGATGGTTGAATTTAGATTCAGCTTCAAGTTCTTGCAGGTTCAGGAATTTAAATTCAAGGTGCTCAATAACAAATACTGACTTGCACTT
GAGCGATGTTCTCACTGAGGATGAGGCACCACAAGATTTATCGGCTGCCGAGTGTGACTGTTCAACCCCCATTGTTCATCTCAAAACTGATATCCTTGAG
AGTGAATCTCTTAGCTTACTAGCTGAGACAACTTATGTGGATAGTGTTTTGACAGCGTTGCCTGTTTTATCAGAGGAGGAGCAGAATGCCCTTGCAGCAA
CTCCAGCCCATCCAGTTGGATTGTATGCACTTTATGCTAGTTCTCTAGCTGGAAATTTAGTGGAACAGCTGTGGAATTTTGCTTGGCCTTCTGCTATTGC
GTTGCTTCATCCTAGCCTTCTACCAGTGGCGGTCATGTGTTTCTTCAGTAAGCTTGCCATAATTGTTGGTGGCCCTTTGGTTGGCAAACTCATGGATTAT
TCTCCCAGAGTACCTGCATATATGGGTTTAAATGTTGTCCAGGCAGCTGCACAGTTGTTATCTGCAACAATGATAATTCATGCACATACTGTTTCTCCTA
CTTCTGTGTCATCTGTTCTTCTCCGTCCATGGTTTATCGTACTTGTGTTAGCGGGGGCTGTCGAGAGGCTATGTGGAGTAGCTACAGGGGTTGCTGTGGA
GCGTGATTGGGTCATACTGTTAGCAGGAATGAATAGGCCTATTGCACTCGCACAAGCAAATGCTGTTCTTAATCGAATTGATCTTATCTGTGAGATAGCT
GGAGCATCAGTATTTGGAATTCTTCTCTCCAAATATGAGCCAGTGACTTGCTTGAAGTTTGCTGCTGCTTCAATGATCTGGTCGTTACCAGTCATGATTG
GTCTCACATGGTTAACCAACAAGCTAGCCACCGGGGTTCTTGACCGTCCAAGATCTTGTCAAACCTGCTGTGGAGAATCTTCTGAAGAAGCTGCGGTTGA
TGCTGGCAGTATAGTGGATAGAGGTCTGGAAACTATCAAGCTTGGGTGGAAGGAATACATGCAGCAGCCTGTTCTTCCTGCAAGCCTTGCCTACGTGCTC
CTCTTCTTCAATGTTGTTCTTGCTCCAAGCAGTTTGATGACAGCATTTTTGACACAGCGTGGAGTTAATCCATCTGTAATAGGGGGCTTCAGTGGATTAT
GTGCTTTCATGGGTGTTGCAGCAACATTTCTGTCAGCCACCTTGGTCAAGCAACTTGGCATTTTAAAGGCTGGAGCAGCTGGACTTGTATTTCAGGCTTC
TCTTCTCTCCTTAGCTGTTGCTGTGTATTGGAGTGGGTCTCTCTCTCAGCAGAGCCCTGTACTCTTCTTCTTGGGATTGATTGTATTATCAAGGCTGGGA
CACATGTCATATGATGTTGTGGGAGCACAGATTCTTCAAACTGGGATCCCAACATCCAAAGCAAATCTTATAGGCACAACAGAAGTTTCTGTTGCAAGTT
TGGCAGAGTCTGTAATGTTGGGAGTTGCAATAATAGCAAATGATGCTTCACATTTTGGATTTTTGGCGATGCTATCTCTTTTATCAGTGGTTGGGGCAGC
ATGGATGTTCTGCCGATTGTTGTTGAATCCAACGGATGAACAGAGAAGTCTTTTTGCAGTAGAATCCAACACATGA
AA sequence
>Potri.005G012900.2 pacid=42805274 polypeptide=Potri.005G012900.2.p locus=Potri.005G012900 ID=Potri.005G012900.2.v4.1 annot-version=v4.1
MAMVTVSQSFNFHGFFVRKASLLPSSASRVRYSINDRRWLNLDSASSSCRFRNLNSRCSITNTDLHLSDVLTEDEAPQDLSAAECDCSTPIVHLKTDILE
SESLSLLAETTYVDSVLTALPVLSEEEQNALAATPAHPVGLYALYASSLAGNLVEQLWNFAWPSAIALLHPSLLPVAVMCFFSKLAIIVGGPLVGKLMDY
SPRVPAYMGLNVVQAAAQLLSATMIIHAHTVSPTSVSSVLLRPWFIVLVLAGAVERLCGVATGVAVERDWVILLAGMNRPIALAQANAVLNRIDLICEIA
GASVFGILLSKYEPVTCLKFAAASMIWSLPVMIGLTWLTNKLATGVLDRPRSCQTCCGESSEEAAVDAGSIVDRGLETIKLGWKEYMQQPVLPASLAYVL
LFFNVVLAPSSLMTAFLTQRGVNPSVIGGFSGLCAFMGVAATFLSATLVKQLGILKAGAAGLVFQASLLSLAVAVYWSGSLSQQSPVLFFLGLIVLSRLG
HMSYDVVGAQILQTGIPTSKANLIGTTEVSVASLAESVMLGVAIIANDASHFGFLAMLSLLSVVGAAWMFCRLLLNPTDEQRSLFAVESNT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G26820 RTS3, MAR1, ATI... MULTIPLE ANTIBIOTIC RESISTANCE... Potri.005G012900
[exp]
0 1
AT4G37200 HCF164 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.007G034400
[exp]
2.82 0.9472
AT4G27600 NARA5 GENES NECESSARY FOR THE ACHIE... Potri.013G078600
[exp]
4.35 0.9601
AT4G37000 ATRCCR, ACD2 ARABIDOPSIS THALIANA RED CHLOR... Potri.007G043700
[exp]
5.09 0.9545
AT1G79600 Protein kinase superfamily pro... Potri.002G000100
[exp]
5.74 0.9531
AT4G09750 NAD(P)-binding Rossmann-fold s... Potri.005G197700
[exp]
11.40 0.9400
AT1G21640 ATNADK2, NADK2,... NAD kinase 2 (.1.2) Potri.002G078700
[exp]
12.72 0.9432 NADK2.2
AT1G10830 Z-ISO1.2, Z-ISO... 15-cis-zeta-carotene isomerase... Potri.014G146900
[exp]
16.73 0.9471
AT1G70610 ABCB26, ATTAP1 ATP-binding cassette B26, tran... Potri.010G045900
[exp]
18.54 0.9266 ATTAP1.1
AT5G42270 FTSH5, VAR1 VARIEGATED 1, FtsH extracellul... Potri.002G012000
[exp]
19.18 0.9422 FTSH2.2
AT5G47860 Protein of unknown function (D... Potri.001G072400
[exp]
19.49 0.9196

Potri.005G012900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.