Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74150 173 / 1e-46 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 119 / 3e-28 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT5G04420 110 / 2e-25 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT5G27630 110 / 6e-25 ACBP5 acyl-CoA binding protein 5 (.1) AT3G05420 110 / 6e-25 ACBP4 acyl-CoA binding protein 4 (.1.2) AT4G04670 109 / 1e-24 Met-10+ like family protein / kelch repeat-containing protein (.1) AT5G18590 103 / 6e-23 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT3G07720 78 / 2e-15 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G48180 77 / 3e-15 NSP5 nitrile specifier protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008200 [exp] 1036 / 0 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 160 / 8e-42 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 157 / 5e-41 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G018800 [exp] 133 / 2e-32 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.005G026900 [exp] 128 / 1e-30 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G031200 [exp] 125 / 3e-30 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 121 / 4e-29 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.008G024700 [exp] 114 / 1e-26 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.004G015200 [exp] 105 / 3e-23 AT4G04670 1162 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010913 [exp] 441 / 9e-148 AT1G18610 177 / 1e-48 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031420 [exp] 387 / 7e-127 AT1G74150 179 / 3e-49 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10017860 [exp] 145 / 4e-37 AT1G18610 478 / 1e-164 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10043420 [exp] 129 / 5e-31 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10037933 [exp] 125 / 6e-30 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10015176 [exp] 124 / 2e-29 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10038666 [exp] 122 / 4e-29 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10034159 [exp] 120 / 2e-28 AT2G36360 658 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10043424 [exp] 118 / 3e-28 AT2G36360 625 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Lus10028825 [exp] 115 / 9e-27 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.005G013000.2 pacid=42803802 polypeptide=Potri.005G013000.2.p locus=Potri.005G013000 ID=Potri.005G013000.2.v4.1 annot-version=v4.1 ATGGGGTCTTTGGGACGTGAAGCTTCAAAGAAGATGGAAATGTGGCTCTATCCTAAGGTTTCAGGATTTAATCCTTCTGAAAGATGGGGTCACTCTGCTT GCTACTCTCATGGTGTTGTATATGTCTTTGGGGGATGTTGTGGGGGTCTTGATTTCAGTGATGTTCTAATGCTAAATCTTGATACAATGGTTTGGAACAC TCTGGCAACCACAGGTCAAGGGCCTGGTCCAAGAGACAGCCACAGTGCTGTTCTTGTGGGGCGTCAAATGATTGTGTTTGGGGGCACTAATGGCTCTAAG AAGGTGAATGATCTTCATATATTGGATCTTGGGACCAAGGAGTGGATAAGCCCTGAATGCAAAGGGACTCCTCCTTTGCCTCGTGAAAGTCACACTGCAA CTTTGATTGGTGATGATAGAATCATGGTGTTTGGGGGAAGTGGAGAAGGTGAAGCAAATTATTTAAATGATTTGCATGTTTTAGACCTCAAGTCCATGAG ATGGACTTCTCCAGAGGTTAAGGGCAGTATTCCGGCTCCTAGGGATAGTCACAGTGCGGTTGAAATCGGTAATAAGCTTTTTGTGTACGGTGGTGATCGT GGTGATAGGTATCACGGTGACGTGGATGTGCTTGATACAGATACAATGACTTGGACAAAGCTTGTTGTGCAAGGATCTTCGCCAGGTGTTCGAGCAGGTC ATGCTTCTGTGAATATTGGAACAAAGCTTTATGTCATTGGGGGTGTTGGGGACAAACATTACTACAATGATGTTTGGGTGCTTGATGTGAGTACTTGTTC ATGGACTCAACTTGATATATCTGGCCAGCAACCTCAAGGGAGGTTTTCTCACACTGCGATTGTCACCGACTTGGATATTGTCATCTATGGAGGGTGCAGA GAGGATGAGCGTCCTCTCAATCAGTTGTTGGTCTTGCAACTTGGAGCAGAACATCCCAATGGTCGATACAACATTTCCATGTGCAAGATCTTTGGACAAC ATTGGAATCAAGAAAAGAGAAGATTTCTCCCAGGATCAGAAGATATTTCGCAGTCAATGTTTCTGGGAAACAATGAAATAGACATGAAGGGCTCATATGA ATCAGAAGAATCAAAGCAACCTTTTCAGTTCAGTTCAGATACTCTGCATCATAAGAAGATAAGACCTACAAATTCAAAAGCATGGGAGATTGATTTAGAA CAAGAAGAGCATTCTCTTTCACCCTCTCACAATTCATCTCCGTCTCAGTCCGACCAAGAACAGATACCGGTTCAGAAATCAGTTGATTCCCTCACATCTT GCAAAGGACTTAATTTCTTTAGGCAGTTAAACAAAATTCCAAGAAATTACCAGGCTGATAGTGTTGCAAGTAATCAGAAACTACCTAGACTTGTGATCCA AAAAACCCGGCACAGGCTCCAAATTTCAAGAGAGAATAAAAGAGTAGAACAATATGTTCATGCTGGGTTTGGCAGGCAAGGAACACCATTCCCAGCAGTG GAACATAGACCCATGGAGCCAGGGTGTATTCAAAACCTGGTTGGTGCTGAGGTTCGAGGTAAAGTTGATGGAGCCTTCGACTCAGGCCTTCTAATGACTG CAACCGTTAATGGGAAGATTTTCAGAGGGGTCTTGTTTTCACCTGCACCTGGTTTCGTATCGAGAGGGGCAATTCTAGCTCAAAATCATGCATCACCAGC AACTCAAATCCCCATTGTTCATCAATTTCCAAACTCCAATCATATTGATACCTTGAAGCCTTCTCATCATCCAACAACATTCTCAGGACAAGAATCCAGT CATAGTTCTCGACAAACTCAAGTGACCAGAACATATCCGGTAATCAGAGCTGCTCCATCATTAGCCAAAGAATCAAATCCAAGAAGTGATCTTCAAGGTG TGGTTCTAACACTAGGAGGACCTGCAAGTGGTCATGCATGA
AA sequence Show only first row Show all	>Potri.005G013000.2 pacid=42803802 polypeptide=Potri.005G013000.2.p locus=Potri.005G013000 ID=Potri.005G013000.2.v4.1 annot-version=v4.1 MGSLGREASKKMEMWLYPKVSGFNPSERWGHSACYSHGVVYVFGGCCGGLDFSDVLMLNLDTMVWNTLATTGQGPGPRDSHSAVLVGRQMIVFGGTNGSK KVNDLHILDLGTKEWISPECKGTPPLPRESHTATLIGDDRIMVFGGSGEGEANYLNDLHVLDLKSMRWTSPEVKGSIPAPRDSHSAVEIGNKLFVYGGDR GDRYHGDVDVLDTDTMTWTKLVVQGSSPGVRAGHASVNIGTKLYVIGGVGDKHYYNDVWVLDVSTCSWTQLDISGQQPQGRFSHTAIVTDLDIVIYGGCR EDERPLNQLLVLQLGAEHPNGRYNISMCKIFGQHWNQEKRRFLPGSEDISQSMFLGNNEIDMKGSYESEESKQPFQFSSDTLHHKKIRPTNSKAWEIDLE QEEHSLSPSHNSSPSQSDQEQIPVQKSVDSLTSCKGLNFFRQLNKIPRNYQADSVASNQKLPRLVIQKTRHRLQISRENKRVEQYVHAGFGRQGTPFPAV EHRPMEPGCIQNLVGAEVRGKVDGAFDSGLLMTATVNGKIFRGVLFSPAPGFVSRGAILAQNHASPATQIPIVHQFPNSNHIDTLKPSHHPTTFSGQESS HSSRQTQVTRTYPVIRAAPSLAKESNPRSDLQGVVLTLGGPASGHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18610			Galactose oxidase/kelch repeat...		Potri.005G013000 [exp]	0	1
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Potri.014G159400 [exp]	6.00	0.7728	AGO902
AT2G17990			unknown protein		Potri.007G012600 [exp]	8.94	0.7349
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	9.48	0.7854	CLC.3
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Potri.001G086000 [exp]	9.79	0.7173
					Potri.008G213600 [exp]	12.72	0.7322
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Potri.012G047200 [exp]	15.19	0.6998	PIN7,Pt-PIN1.2
AT1G02960			unknown protein		Potri.002G208058 [exp]	15.96	0.7558
AT3G11090	AS2	LBD21	LOB domain-containing protein ...		Potri.008G071500 [exp]	17.60	0.7311
AT5G02440			unknown protein		Potri.001G238900 [exp]	17.94	0.7407
AT5G57123			unknown protein		Potri.018G140500 [exp]	19.67	0.6726

Compare expression of checked genes

Potri.005G013000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.