Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74190 451 / 1e-142 AtRLP15 receptor like protein 15 (.1) AT1G58190 452 / 3e-142 AtRLP9 receptor like protein 9 (.1.2) AT2G25470 438 / 6e-138 AtRLP21 receptor like protein 21 (.1) AT1G74180 439 / 1e-137 AtRLP14 receptor like protein 14 (.1) AT1G07390 432 / 2e-134 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74170 426 / 1e-132 AtRLP13 receptor like protein 13 (.1) AT3G53240 400 / 5e-124 AtRLP45 receptor like protein 45 (.1) AT5G49290 385 / 4e-118 ATRLP56 receptor like protein 56 (.1) AT1G54470 296 / 1e-85 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT3G11010 245 / 6e-68 AtRLP34 receptor like protein 34 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G011600 [exp] 1432 / 0 AT1G74190 439 / 1e-135 receptor like protein 15 (.1) Potri.005G007600 [exp] 1420 / 0 AT1G58190 439 / 2e-136 receptor like protein 9 (.1.2) Potri.005G007900 [exp] 1399 / 0 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.005G009700 [exp] 1393 / 0 AT1G74190 453 / 4e-141 receptor like protein 15 (.1) Potri.017G018700 [exp] 1361 / 0 AT1G58190 481 / 1e-152 receptor like protein 9 (.1.2) Potri.005G013400 [exp] 1290 / 0 AT1G74190 412 / 4e-129 receptor like protein 15 (.1) Potri.005G013200 [exp] 942 / 0 AT1G58190 453 / 1e-142 receptor like protein 9 (.1.2) Potri.005G006701 [exp] 907 / 0 AT1G74190 438 / 3e-136 receptor like protein 15 (.1) Potri.005G013800 [exp] 896 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 434 / 6e-137 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 350 / 2e-104 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 310 / 4e-90 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10016384 [exp] 291 / 7e-83 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 273 / 5e-77 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10006825 [exp] 268 / 5e-75 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10016342 [exp] 266 / 1e-74 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1) Lus10002742 [exp] 261 / 1e-72 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10039514 [exp] 260 / 3e-72 AT2G34930 447 / 6e-142 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 258 / 1e-71 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G013100.4 pacid=42803244 polypeptide=Potri.005G013100.4.p locus=Potri.005G013100 ID=Potri.005G013100.4.v4.1 annot-version=v4.1 ATGAAGATGAGGCAAATGTGGGTGTGCATGCTGCTCATGGCACTGGCCTTCGTCAACGAGCGGTGCCATTGTTGTCTGGAGGAAGAGAGAATTAGTCTCT TAGAGATAAAAGCTTGGTTCAGTCATGCAGGTGCTGGGTCCCATGAGCTAGAAGGTTGGGATAAAGGGCATTTTAATTGCTGTAACTGGGATATGGTTGT GTGTGACAACACCACAAACCGAGTGATCAAACTATATCTTTCTTTCGTAAATTCTGATGCAGTCGAAGACTTGGATCTCAATGCGTCTTTGTTTCTGCCT TTCAAAGAACTGGAGAATCTCGACTTAAGCGGCAACCAATTAGTTGGTGGCTTAAAGAATCAAGGTTTTCAAGTACTAGCTTCAGGGTTGAGGAATTTGA AGGAACTTTATCTAAATGACAATAAATTTAACGACAGCATTTTAACATCTCTCAGTGGTTTTTCAACTCTCAAATCTCTATATCTATCAAACAATAGGTT CACAGTAACAATTGATCTCAAAGGTTTTCAAGTGCTAGCTTCAGGGTTGAGGAATTTGGAGCAACTTGATCTAAGTTACAATAAATTGAACGACAGCGTT TTATCATCTCTCAGTGGATTTTCAACTCTCAAATTTCTAGATCTATCAAACAATAGGTTCACAGGATCAACTGGTCTCAATGGTTTAAGGAAATTAGAAA CCTTGTATCTGGATTCAACTGACTTCAAGGAAAGCATTTTGATAGAGTCATTGGGAGCGTTGCCATCCCTCAAGACCTTACATGCACGTTATAGTAGATT TACACACTTTGGAAAAGGCTGGTGTGAACTGAAGAATCTTGAACATCTATTTCTCTCAGGAAACAATCTAAAGGGCGTACTCCCTCCTTGTTTTGGAAAT CTATCATCTCTACAAATCTTGGATTTATCTTACAACCAATTGGAGGGAAATATTGCATTTAGTCACATTTCCCATCTTACGCAGCTTGAATACCTCTCAG TTTCAAATAACTACTTTCAAGTCCCAATATCATTTGGTTCATTTATGAACCACTCCAACCTCAAGTTCTTTGAATGCGATAACAATGAGCTAATAGCTGC ACCTAGTTTTCAGCCTTTAGTTCCAAAGTTCCGGCTTCGTGTTTTTAGTGCTTCAAACTGTACTCCAAAACCACTCGAGGCTGGATTTCCAAACTTCCTC CAGAGCCAATATGATTTGGTGTTTGTTGATCTATCCCACAACAAATTCGTTGGAGAACCTTTCCCATCTTGGCTGTTTGAGAATAATACAAAGTTAAATC GACTATATTTGAGAGACACCTCATTTATAGGTCCTTTGCAGCTGCCACAACATCCAACACCCAACCTTCAGACAGTAGATATGTCTGGCAACAGCATACA TGGTCAACTTGCAAGGAACATATGTTCGATTTTTCCACGTTTGAAGAACTTCATGATGGCTAACAACAGCCTCACAGGTTGTATTCCTCCTTGTTTTGGG AATATGAGCTCTCTCGAATACTTGGATCTTTCCAACAATCACATGTCTTGTGAACTGCTTGAGCATAATTTGCCAACAGTAGGCTCCTCGTTGTGGTCCT TAAAGCTGTCCAATAACAATTTCAAAGGGCGATTACCACTCTCTGTGTTCAACATGACTAGCCTAGAGTACCTCTTTCTCGATGGAAACAAATTTGCAGG ACAAGTATCGGGTACCTTTTCTCTTGCATCATCATTTTCGTGGTTTGATATCAGTAACAATCTTTTGTCAGGCATGCTTCCAAGGGGAATTGGGAACTCT TCAATATACCGCTTTCAGGCAATTGATTTGTCCAGAAATCATTTTGAAGGTACCATTCCAAAAGAATATTTCAATTCTTATTGGCTTGAATTTTTAGATC TTTCTGAAAACAATCTGTCTGGGTCTTTGCCGTTGGGCTTCCTTGCACCACATTTACGCCATGTCCACCTATACGGAAATCGATTGACCGGTCCACTGCC AAATGCTTTTTATAACATCTCTTCTTTGGTGACATTAGATCTCGGCTATAACAACTTAACTGGGCCAATTCCAAACTGGATTGCTAGCCTTTCGGAATTG AGTATTCTTCTTCTGAAATCTAATCAATTCAATGGGGAACTTCCTGTTCAGTTATGCTTGTTAAGGAAATTAAGCATATTGGATCTTTCAGAAAATAATT TTTCTGGTCTGTTACCCTCATGTTTGAGCAATTTAGATTTTACGGAATCATATGAAAAAACTTTGGTTCACACTAGTACGGAGTCACGAGATGATGGAAG CCGGAAAGAAATATTTGCATCCATAGGGGGAAGAGAATTGGGGAACGAAGGTTTTTATCTTTTTGATAAAATTTTGTGGCCAGAGATCAGTGTAAAAATA TCCGTAGAGCTTACATCAAAGAAAAATTTCTACACTTACGAAGGCGATATCCTTCGTTACATGTCTGTTATGGATCTTTCTTGTAACAGATTCACTGGAG AAATCCCGACAGAGTGGGGAAACTTAAGTGGGATATATGCTCTAAATCTGTCACAAAATAATTTTAATGGATTGATCCCTCCATCTTTCTCCAATCTGAA GCAGATAGAAAGCTTGGATCTTTCTCACAACAACTTGAATGGGAGAATTCCTGCACAACTCGTTGAACTGACCTTTCTAGCAGTTTTCAACGTGTCGTAC AATAAATTGTCAGGAAGAACACCGGAGATGAAAAATCAATTTGCTACCTTTGATGAGAGCAGTTATAAAGGGAATCCTCTTCTTTGTGGACCTCCATTGC AAAACAGTTGCGACAAAACAGAATCACCATCCGCGAGAGTGCCTAACGATTCCAATGGAGATGGTGGCTTCATAGACATGTACAGTTTCTATGCCAGCTT CGGTGTGTGTTACATAATTGTGGTGTTGACAATTGCAGCAGTACTGTGCATAAATCCGGATTGGCGACGCAGGTGGTTTTATTTCATTGAAGAATGCATG GACACTTGCTACTGCTTTTTGGCTATTAACTTTCCCAAGTTGTCCAGATTCAGAAGGTGA
AA sequence Show only first row Show all	>Potri.005G013100.4 pacid=42803244 polypeptide=Potri.005G013100.4.p locus=Potri.005G013100 ID=Potri.005G013100.4.v4.1 annot-version=v4.1 MKMRQMWVCMLLMALAFVNERCHCCLEEERISLLEIKAWFSHAGAGSHELEGWDKGHFNCCNWDMVVCDNTTNRVIKLYLSFVNSDAVEDLDLNASLFLP FKELENLDLSGNQLVGGLKNQGFQVLASGLRNLKELYLNDNKFNDSILTSLSGFSTLKSLYLSNNRFTVTIDLKGFQVLASGLRNLEQLDLSYNKLNDSV LSSLSGFSTLKFLDLSNNRFTGSTGLNGLRKLETLYLDSTDFKESILIESLGALPSLKTLHARYSRFTHFGKGWCELKNLEHLFLSGNNLKGVLPPCFGN LSSLQILDLSYNQLEGNIAFSHISHLTQLEYLSVSNNYFQVPISFGSFMNHSNLKFFECDNNELIAAPSFQPLVPKFRLRVFSASNCTPKPLEAGFPNFL QSQYDLVFVDLSHNKFVGEPFPSWLFENNTKLNRLYLRDTSFIGPLQLPQHPTPNLQTVDMSGNSIHGQLARNICSIFPRLKNFMMANNSLTGCIPPCFG NMSSLEYLDLSNNHMSCELLEHNLPTVGSSLWSLKLSNNNFKGRLPLSVFNMTSLEYLFLDGNKFAGQVSGTFSLASSFSWFDISNNLLSGMLPRGIGNS SIYRFQAIDLSRNHFEGTIPKEYFNSYWLEFLDLSENNLSGSLPLGFLAPHLRHVHLYGNRLTGPLPNAFYNISSLVTLDLGYNNLTGPIPNWIASLSEL SILLLKSNQFNGELPVQLCLLRKLSILDLSENNFSGLLPSCLSNLDFTESYEKTLVHTSTESRDDGSRKEIFASIGGRELGNEGFYLFDKILWPEISVKI SVELTSKKNFYTYEGDILRYMSVMDLSCNRFTGEIPTEWGNLSGIYALNLSQNNFNGLIPPSFSNLKQIESLDLSHNNLNGRIPAQLVELTFLAVFNVSY NKLSGRTPEMKNQFATFDESSYKGNPLLCGPPLQNSCDKTESPSARVPNDSNGDGGFIDMYSFYASFGVCYIIVVLTIAAVLCINPDWRRRWFYFIEECM DTCYCFLAINFPKLSRFRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013100 [exp]	0	1
AT4G35160			O-methyltransferase family pro...		Potri.004G050400 [exp]	1.00	0.9668	FOMT2,Pt-OOMT2.13
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.009G169900 [exp]	1.41	0.9648
AT2G23770			protein kinase family protein ...		Potri.010G078700 [exp]	2.23	0.9363
AT5G38260			Protein kinase superfamily pro...		Potri.017G117340 [exp]	3.00	0.9239
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Potri.008G170100 [exp]	4.58	0.9301
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.011G062750 [exp]	7.74	0.9335
AT1G27100			Actin cross-linking protein (....		Potri.004G130200 [exp]	10.00	0.8984
AT1G68710			ATPase E1-E2 type family prote...		Potri.010G132700 [exp]	10.24	0.8979
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.010G231500 [exp]	10.67	0.9012
AT1G14550			Peroxidase superfamily protein...		Potri.010G236910 [exp]	10.77	0.8867

Compare expression of checked genes

Potri.005G013100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.