Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58190 454 / 8e-143 AtRLP9 receptor like protein 9 (.1.2) AT1G07390 410 / 2e-126 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74180 403 / 3e-124 AtRLP14 receptor like protein 14 (.1) AT2G25470 402 / 3e-124 AtRLP21 receptor like protein 21 (.1) AT1G74190 396 / 1e-121 AtRLP15 receptor like protein 15 (.1) AT1G74170 390 / 4e-119 AtRLP13 receptor like protein 13 (.1) AT5G49290 380 / 2e-116 ATRLP56 receptor like protein 56 (.1) AT3G53240 350 / 3e-105 AtRLP45 receptor like protein 45 (.1) AT1G54470 272 / 9e-77 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT2G34930 258 / 4e-72 disease resistance family protein / LRR family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G026914 [exp] 1264 / 0 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3) Potri.003G013200 [exp] 1251 / 0 AT2G25470 453 / 6e-144 receptor like protein 21 (.1) Potri.003G028557 [exp] 1215 / 0 AT1G07390 388 / 1e-117 receptor like protein 1 (.1.2.3) Potri.005G009300 [exp] 1192 / 0 AT1G07390 449 / 9e-140 receptor like protein 1 (.1.2.3) Potri.003G013700 [exp] 1153 / 0 AT2G25470 366 / 2e-110 receptor like protein 21 (.1) Potri.003G025100 [exp] 1149 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1) Potri.003G026308 [exp] 1140 / 0 AT1G74190 423 / 1e-130 receptor like protein 15 (.1) Potri.005G013800 [exp] 1107 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1) Potri.005G006701 [exp] 1075 / 0 AT1G74190 438 / 3e-136 receptor like protein 15 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 455 / 7e-145 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 301 / 7e-87 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10016384 [exp] 274 / 7e-77 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 271 / 3e-76 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 271 / 5e-76 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 270 / 1e-75 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10027856 [exp] 269 / 1e-75 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10016337 [exp] 266 / 2e-74 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10003389 [exp] 261 / 1e-72 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10006825 [exp] 259 / 6e-72 AT1G47890 377 / 6e-114 receptor like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G013200.1 pacid=42803777 polypeptide=Potri.005G013200.1.p locus=Potri.005G013200 ID=Potri.005G013200.1.v4.1 annot-version=v4.1 ATGATGGTGAAAAAAATGGGGGCTTGGATGTTGCTAACATTATTGACTTTGGTTGGCGACTGGTGTGGTTGTTGTTATGGATGTTTGGAGGAAGAGAGAA TTGGTCTCTTGGAGATCAAAGCTTTGATCGACCCAAATCACCTTTTCTTGGGAGATTGGGTGGACAGTAGTAATTGTTGTGAGTGGCCTAGGATCGAGTG TGATAACACTACAAGGCGAGTGATCCAACTCAATCTTGGGGATGCAAGGGATAAGAGCTTGGGGGATTGGGTTCTCAACGCATCTTTGTTTCTGCCTTTT AAGGAATTGCAAAGTCTTGATTTGGGTTCTAATGGATTAGTTGGTTGCTTTGAGAATCAAGGTTTTCAAGTGCTAGCTTCAGGATTGAGGAATTTGGAGG AACTTTATCTGACTCACAATAAATTGAACGACATTATTTTATCGTCTCTCGGTGGTTTTTCAACTCTCAAATCTCTATATCTATCAAACAATAGGTTCAC AGGATCAACTGGTCTCAATGGTTTAAGGAATTTAGAAATCTTGTATCTGAATTCAAATGACTTCAAGGAAAGCGTTTTGATAGAGTCATTGGGAGCGTTG CCATCCCTCAAGACCTTACATGCAAGTTTTAGTAAATTTAAACACTTTGGGAAAGGGTTGTCTAATTCGTCTAGCCTTGAAGAAGTGTTCCTCGATGATT CTTTTCTCCCAGCAAGCTTTCTTAGGAACATTGGACCCTTGTCTACTCTTAAAGTCCTATCATTGACAGGAGTTGACTTCAGTAGCACCCTACCTGCTGA AGGGACTTTCTTTAATTCGAGCACCCTTGAAGAATTACATCTAGATCGTACTTCTCTCCCATTAAACTTTCTCCAGAACATCGGAACATTGCCTACTCTT AAAGTATTGTCTGTTGGCCAATGTGACCTCAATGACACCCTGCCCGCTCAAGGTTGGTGTGAATTGAAGAATTTGGAGCAATTAGATCTCTCTGGAAATA ATTTTGGAGGTTCACTCCCAGATTGTTTGGGAAACTTATCATCTCTACAACTATTAGATGTTTCTAATAACCAATTTACTGGAAATATTGCCTCCGGTTC TCTTACAAACCTCATATCCATTGAATCCCTCTCACTATCAAATAACCTCTTTGAAGTTCCCATTTCAATGAAGCCTTTTATGAACCACTCAAGCCTCAAG TTCTTCTACAGTAAGAACAACAAACTAGTAACAGAACCCATGTCCTTTCATGATTTTATTCCAAAGTTCCAACTAGTCTTTTTTCGCTTGTCAAATAGTC CAACATCGGAAGCAGTCAATATAGAGATTCCCAACTTCCTCTATTCCCAATACGACTTAAGAGTCCTTGATCTCTCCCACAACAACATCACTGGAATGTT TCCATCGTGGTTGCTTAAGAACAATACACAGTTGGAGCAATTACTGCTAAACGAGAACTCCTTTGTTGGTACTTTGCAGTTGCAAGATCACCCAAATCCG CATATGACTGAATTAGATATATCCAACAACAACATGCACGGTCAAATTCTAAAAAATAGTTGTTTGATCTTTCCAAATCTATGGATCTTAAGGATGGCTG AGAATGGATTCACAGGTTGTATTCCTTCTTGTTTAGGAAATAATCTCTCAATGGCAATTTTAGATTTATCCAACAACCAATTGTCTACGGTAAAACTAGA ACAACCAAGAATATGGTCTCTCCAGCTGTCAAACAACAATTTGGGTGGGCAAATACCAATCTCGATTTTCAATTCTTCTGGCTCGCTTTTTCTCTACCTA AGTGGTAACAACTTTTGGGGTCAAATACAAGATTTTCCATCACCCTCTTGGGAAATATGGGTTGAATTGGATTTGAGTAACAATCAATTTTCAGGCATGC TTCCAAGGTGCTTTGTCAATTCGACACAAATGTTCACATTTGATTTGTCCAAAAACCAGTTTAATGGTCCAATTACAGAAGATTTTTGTAAGCTTGACCA GCTTGAATATTTGGACCTTTCTGAGAACAACTTGTCTGGTTTTATACCATCTTGCTTCAGTCCACCACAGATAACCCAAGTGCATCTATCCAAAAATAGA TTGAGTGGTCCATTAACAAATGGATTTTATAACAGCTCTTCTCTTATTACGATAGATCTTCGAGATAACAACTTCACTGGCTCCATTCCAAATTGGATTG GCAATCTTTCATCATTGAGTGTTCTTCTTCTGAGGGCTAATCACTTTGATGGTGAATTCCCTGCTCATTTATGCTGGTTAGAAAAATTAAAGTTTTTGGA TGTTTCACAAAATCACCTCTCTGGCCCACTACCCTCCTGTTTGGGCAATCTTACTTTCAAGGAAAGTTCCGCTTTGGTGGATCGTTTGCAATTCTTGAGA AACCCTTTTTGGCATTACTATACAGATGAAGTGATAGAATTTAAGACGAAAAATATGTATTATAGTTACCAAGGAGAAATTCTCGACTTAATGTCTGGTA TTGATCTCTCCAGCAACAACTTCTTAGGAGCAATCCCACAAGAATTGGGAAGCTTAAGTGAGATACATGCATTAAACTTATCACACAACAATCTTGCTGG ATCTATACCTGCAACGTTCTCAAACTTGAAGCAGATTGAGAGCTTGGATGTTTCTCACAACAACTTGAATGGGAGAATTCCTGCACAACTCATTGAACTG ACCTTTCTAGAAGTTTTCAACGTGTCGTACAATAATTTGTCAGGAAAAACACCTGAGATGAAATATCAATTTGCTACCTTTGATGAGAGCAGTTATAAAG GGAATCCTCTTCTTTGTGGACCTCCATTGCAAAACAGTTGCGACAAAACAGAATCACCATCAGCGAGAGTGCCTAACGATTTCAATGGAGATGGTGGCGT CATAGACATGGACAGTTTCTATGTGAGCTTCGGTGTGTGTTACATAATTTTGGTGTTGACAATTGCAACAGTACTGTGCATAAATCCGCATTGGCGACGC AGGTGGTTTTACTTCATTGAAGAATGCATCGACACTTGCTACTGCCTTTTGGCTATTAACTTTCGCAAGTTGTCCAGATTCAGAAGGTGA
AA sequence Show only first row Show all	>Potri.005G013200.1 pacid=42803777 polypeptide=Potri.005G013200.1.p locus=Potri.005G013200 ID=Potri.005G013200.1.v4.1 annot-version=v4.1 MMVKKMGAWMLLTLLTLVGDWCGCCYGCLEEERIGLLEIKALIDPNHLFLGDWVDSSNCCEWPRIECDNTTRRVIQLNLGDARDKSLGDWVLNASLFLPF KELQSLDLGSNGLVGCFENQGFQVLASGLRNLEELYLTHNKLNDIILSSLGGFSTLKSLYLSNNRFTGSTGLNGLRNLEILYLNSNDFKESVLIESLGAL PSLKTLHASFSKFKHFGKGLSNSSSLEEVFLDDSFLPASFLRNIGPLSTLKVLSLTGVDFSSTLPAEGTFFNSSTLEELHLDRTSLPLNFLQNIGTLPTL KVLSVGQCDLNDTLPAQGWCELKNLEQLDLSGNNFGGSLPDCLGNLSSLQLLDVSNNQFTGNIASGSLTNLISIESLSLSNNLFEVPISMKPFMNHSSLK FFYSKNNKLVTEPMSFHDFIPKFQLVFFRLSNSPTSEAVNIEIPNFLYSQYDLRVLDLSHNNITGMFPSWLLKNNTQLEQLLLNENSFVGTLQLQDHPNP HMTELDISNNNMHGQILKNSCLIFPNLWILRMAENGFTGCIPSCLGNNLSMAILDLSNNQLSTVKLEQPRIWSLQLSNNNLGGQIPISIFNSSGSLFLYL SGNNFWGQIQDFPSPSWEIWVELDLSNNQFSGMLPRCFVNSTQMFTFDLSKNQFNGPITEDFCKLDQLEYLDLSENNLSGFIPSCFSPPQITQVHLSKNR LSGPLTNGFYNSSSLITIDLRDNNFTGSIPNWIGNLSSLSVLLLRANHFDGEFPAHLCWLEKLKFLDVSQNHLSGPLPSCLGNLTFKESSALVDRLQFLR NPFWHYYTDEVIEFKTKNMYYSYQGEILDLMSGIDLSSNNFLGAIPQELGSLSEIHALNLSHNNLAGSIPATFSNLKQIESLDVSHNNLNGRIPAQLIEL TFLEVFNVSYNNLSGKTPEMKYQFATFDESSYKGNPLLCGPPLQNSCDKTESPSARVPNDFNGDGGVIDMDSFYVSFGVCYIILVLTIATVLCINPHWRR RWFYFIEECIDTCYCLLAINFRKLSRFRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.005G013200 [exp]	0	1
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119132 [exp]	10.58	0.8232
					Potri.003G153266 [exp]	14.42	0.7982
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119066 [exp]	20.39	0.8336
AT5G66850		MAPKKK5	mitogen-activated protein kina...		Potri.002G129100 [exp]	24.37	0.8135
					Potri.003G153332 [exp]	26.51	0.7748
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.015G095900 [exp]	27.20	0.7883	Pt-PPD3.1
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.003G198401 [exp]	29.74	0.8161
AT5G05460		AtENGase85A	Endo-beta-N-acetyglucosaminida...		Potri.010G184200 [exp]	32.44	0.7991
AT2G23450			Protein kinase superfamily pro...		Potri.007G034500 [exp]	40.98	0.7808
AT1G71400		AtRLP12	receptor like protein 12 (.1)		Potri.012G012535 [exp]	43.39	0.8130

Compare expression of checked genes

Potri.005G013200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.