Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74190 411 / 5e-129 AtRLP15 receptor like protein 15 (.1) AT1G74170 400 / 3e-124 AtRLP13 receptor like protein 13 (.1) AT1G07390 395 / 2e-123 AtRLP1 receptor like protein 1 (.1.2.3) AT1G74180 393 / 5e-122 AtRLP14 receptor like protein 14 (.1) AT1G58190 383 / 1e-118 AtRLP9 receptor like protein 9 (.1.2) AT3G53240 382 / 1e-118 AtRLP45 receptor like protein 45 (.1) AT2G25470 375 / 1e-115 AtRLP21 receptor like protein 21 (.1) AT1G54470 356 / 3e-108 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT5G49290 315 / 1e-93 ATRLP56 receptor like protein 56 (.1) AT3G05370 255 / 3e-72 AtRLP31 receptor like protein 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G013100 [exp] 1312 / 0 AT1G74190 452 / 6e-143 receptor like protein 15 (.1) Potri.005G011600 [exp] 1298 / 0 AT1G74190 439 / 1e-135 receptor like protein 15 (.1) Potri.005G007900 [exp] 1259 / 0 AT1G74170 430 / 5e-132 receptor like protein 13 (.1) Potri.005G009700 [exp] 1249 / 0 AT1G74190 453 / 4e-141 receptor like protein 15 (.1) Potri.005G007600 [exp] 1247 / 0 AT1G58190 439 / 2e-136 receptor like protein 9 (.1.2) Potri.017G018700 [exp] 1240 / 0 AT1G58190 481 / 1e-152 receptor like protein 9 (.1.2) Potri.005G013200 [exp] 757 / 0 AT1G58190 453 / 1e-142 receptor like protein 9 (.1.2) Potri.005G006701 [exp] 736 / 0 AT1G74190 438 / 3e-136 receptor like protein 15 (.1) Potri.005G009300 [exp] 712 / 0 AT1G07390 449 / 9e-140 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 442 / 1e-141 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 305 / 5e-89 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10027856 [exp] 278 / 1e-79 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10016384 [exp] 265 / 9e-75 AT2G34930 464 / 5e-148 disease resistance family protein / LRR family protein (.1) Lus10011064 [exp] 265 / 1e-74 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10016340 [exp] 253 / 2e-70 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10032335 [exp] 250 / 2e-70 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10003387 [exp] 245 / 9e-68 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10026415 [exp] 243 / 3e-67 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10024721 [exp] 240 / 5e-67 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G013400.2 pacid=42802525 polypeptide=Potri.005G013400.2.p locus=Potri.005G013400 ID=Potri.005G013400.2.v4.1 annot-version=v4.1 ATGAATATGAGGCAAATGTGGGTGTGGATGCTGCTCATGGCACTGGCCTTCGTCAACGAGCGGTGCCATTGTTGTTTGGAGGAAGAGAGAATTAGTCTCT TAGAGATAAAAGCTTGGTTCAATCATGCAGGTGCAGCTGGGTCCTATGATCAGCTAGAAGGTTGGGATAAAGAGCATTTTAATTGCTGTAATTGGGATTA TTATAGGGTTGTGTGTGACAACACCACAAACCGAGTGATCGAACTACATCTTTCTAGCGTAAATTATGATGGTCTCAATGCAGTCGAAGACTTGGATCTC AATTCGTCTTTGTTTCTGCCTTTCAAAGAACTGGAGATTCTCGACTTAAGCGGCAACCAATTAGTTGGTGGCTTAAAGAATCAAGGCTGGTGTGAACTGA AGAATCTTGAACACCTATCTCTCTCAGGAAACAATCTAAAGGGCGTACTCCCTCCTTGTTTGGGAAATCTATCATCTTTACGATCCTTGGATTTATCTGA CAACCAATTGGAGGGCAATATTGCCCTTAGTCACCTTTCACATCTTCCGCAGCTTCAATACCTCAAAGTTTCAAATAACTACTTTCAAGTTCCAATATCA TTTGCTTCATTTATGAACCTCTCCAACCTCAAGTTCTTTTTATGCGATAACAATGAGCTAATAGCTACACCCAGTTTTCAGCCTTTAGTTCCAAAGTTCC GGCTTCGTGTTTTTAGTGCTTCAAACTGTACTCCAAAACCACTCGAGGCTGGATTGCCAAACTTCCTCCAGAGCCAATATGATTTGGTGTTTGTTGATCT ATCCCACAACAAATTCGTTGGAGAACCTTTCCCATCTTGGCTGTTTGAGAATAATACAAAGTTAAATCGACTATATTTGAAAGACACCTCATTTATAGGT CCTTTGCAGCTGCCACAACATCCAACACCCAACCTTCAGACAGTAGATATGTCTGGCAACAGCATACATGGTCAAATTGCAAGGAACATATGTTCGATTT TTCCACGTTTGAAGAACTTCATGATGGCTAACAACACCCTTACAGGTTGTATTCCTCCTTGTTTTGGGAATATGAGCTCTCTCGAATACTTGGATCTTTC CAACAATCACATGTCTTGTGAACTGCTTGAGCATAATTTGCCAACCTCGTTGTGGTTTTTAAAGCTGTCCAATAACAATTTCAAAGGGCGATTACCACTC TCTGTGCTCAACATGACTGACCTAGACTACCTCTTTCTCGATGGAAACAAATTTGCAGGACAAGTATCGGGTACCTTTTCTCTTGCATCATCATTTTCGT GGTTTGATATTAGTAACAATCTTTTGTCAGGCATGCTTCCAAGGTTGCGGGGAATTGGGAACTCTTCACTAAACAGCTTGCGGGGAATTGGGAACTCTTC ACTAAACAGCTTGCAGGGAATTGATTTGTCCAGAAATCAGTTTGAAGGTACCATTCCAATAGAATATTTCAATTCTTCTGGGCTTGAATTTTTAGATCTT TCTGAAAACAATCTGTCTGGGTCTTTGCCATTGGGCTTCCTTGCATCATATTTACGCTATGTCCACCTATATGGAAATCGATTGAGCGGTCCACTGCCAT ATGCTTTTTGTAATCTCTCTTCGTTGATGACATTTGATCTCGGCGATAACAACTTAACTGGGCCCATTCCAAATTGGATTGATAGCCTTTCGAAATTGAG CATTTTTGTTCTCAAATCTAATCAATTCAATGGGAAACTACCTTATCAGTTATGCTTGTTAAGGAACTTAAGCATATTGGATCTTTCAGAAAATAACTTT TCTGGTCCGTTACCCTCATGTTTGAGCAATTTAGATTTTACGGCATCGGATGAAAAAACTTGGGTTGACACTGGTAGGGAGACAGGAGATGATGGAAGCC GGAAAGAAATATTTGCATCCATAGGGGGAAGAGAATTGGAGAACGAAGGTTTTTATCTTGATGACAAAATTTTGTGGCCAGAGATCAGTGTAAAAATATC TGTAGAGCTTACAGCAAAGAAAAATTTCTACACTTACAAAGGTGATATCCTTAGTTACATGTCTGTTATGGATCTTTCTTGTAACAGATTCACTGGAGAA ATCCCGACAGAATGGGGAAACTTAAGTGGGATATATGCTCTAAATCTGTCGCAAAATAATCTCACTGGATTGATCCCTTCATCCTTCTCCAACCTGAAGC AGATAGAGAGCTTGGATCTTTCTCACAACAACTTGAATGGGAGAATTCCTGCACAACTCATTGAACTGACCTTTCTAGCAGTTTTCAACGTGTCGTACAA TAATTTGTCAGGAAGAACACCGGAGATGAAAAATCAATTTGCTACCTTCGATGAGAGCAGTTATAAAGGGAATCCTCTTCTTTGTGGACCTCCATTGCAA AACAGTTGCGACAAGACAGAATCACCATCCGCGAGAGTGCCTAACGATTCCAATGGAGATGGTGGCTTCATAGACATGTACAGTTTCTATGCCAGCTTTG GTGTGTGTTACATAATTATGGTATTGACAATTGCAGCAGTACTGTGCATAAATCCGCATTGGCGACGCAGGTGGTTTTACTTCATTGAAGAATGCATCGA CACTTGCTACTGCTTTTTGGCTATTAACTTTCCCAAGTTGTCCAGATTCAGAAGGTGA
AA sequence Show only first row Show all	>Potri.005G013400.2 pacid=42802525 polypeptide=Potri.005G013400.2.p locus=Potri.005G013400 ID=Potri.005G013400.2.v4.1 annot-version=v4.1 MNMRQMWVWMLLMALAFVNERCHCCLEEERISLLEIKAWFNHAGAAGSYDQLEGWDKEHFNCCNWDYYRVVCDNTTNRVIELHLSSVNYDGLNAVEDLDL NSSLFLPFKELEILDLSGNQLVGGLKNQGWCELKNLEHLSLSGNNLKGVLPPCLGNLSSLRSLDLSDNQLEGNIALSHLSHLPQLQYLKVSNNYFQVPIS FASFMNLSNLKFFLCDNNELIATPSFQPLVPKFRLRVFSASNCTPKPLEAGLPNFLQSQYDLVFVDLSHNKFVGEPFPSWLFENNTKLNRLYLKDTSFIG PLQLPQHPTPNLQTVDMSGNSIHGQIARNICSIFPRLKNFMMANNTLTGCIPPCFGNMSSLEYLDLSNNHMSCELLEHNLPTSLWFLKLSNNNFKGRLPL SVLNMTDLDYLFLDGNKFAGQVSGTFSLASSFSWFDISNNLLSGMLPRLRGIGNSSLNSLRGIGNSSLNSLQGIDLSRNQFEGTIPIEYFNSSGLEFLDL SENNLSGSLPLGFLASYLRYVHLYGNRLSGPLPYAFCNLSSLMTFDLGDNNLTGPIPNWIDSLSKLSIFVLKSNQFNGKLPYQLCLLRNLSILDLSENNF SGPLPSCLSNLDFTASDEKTWVDTGRETGDDGSRKEIFASIGGRELENEGFYLDDKILWPEISVKISVELTAKKNFYTYKGDILSYMSVMDLSCNRFTGE IPTEWGNLSGIYALNLSQNNLTGLIPSSFSNLKQIESLDLSHNNLNGRIPAQLIELTFLAVFNVSYNNLSGRTPEMKNQFATFDESSYKGNPLLCGPPLQ NSCDKTESPSARVPNDSNGDGGFIDMYSFYASFGVCYIIMVLTIAAVLCINPHWRRRWFYFIEECIDTCYCFLAINFPKLSRFRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013400 [exp]	0	1
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119066 [exp]	4.00	0.9092
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.018G120827 [exp]	4.69	0.8772
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Potri.009G119132 [exp]	5.00	0.8951
AT3G48090		ATEDS1, EDS1	enhanced disease susceptibilit...		Potri.015G069600 [exp]	6.92	0.9060	EDS1.2
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270700 [exp]	11.40	0.8790
AT3G28890		AtRLP43	receptor like protein 43 (.1.2...		Potri.012G010445 [exp]	11.74	0.8913
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.015G086200 [exp]	11.91	0.7964
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004500 [exp]	12.80	0.9006
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G005600 [exp]	13.49	0.8545
AT3G25010		AtRLP41	receptor like protein 41 (.1)		Potri.012G026900 [exp]	14.49	0.8193

Compare expression of checked genes

Potri.005G013400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.