Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74190 432 / 3e-135 AtRLP15 receptor like protein 15 (.1) AT2G25470 422 / 9e-132 AtRLP21 receptor like protein 21 (.1) AT1G07390 418 / 2e-129 AtRLP1 receptor like protein 1 (.1.2.3) AT1G58190 410 / 3e-127 AtRLP9 receptor like protein 9 (.1.2) AT5G49290 405 / 1e-125 ATRLP56 receptor like protein 56 (.1) AT1G74170 394 / 1e-120 AtRLP13 receptor like protein 13 (.1) AT1G74180 379 / 1e-115 AtRLP14 receptor like protein 14 (.1) AT3G53240 377 / 2e-115 AtRLP45 receptor like protein 45 (.1) AT1G54470 277 / 1e-78 RPP27 resistance to Peronospora parasitica 27, RNI-like superfamily protein (.1.2) AT4G20140 228 / 4e-61 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G009300 [exp] 1385 / 0 AT1G07390 449 / 9e-140 receptor like protein 1 (.1.2.3) Potri.003G026914 [exp] 1278 / 0 AT1G07390 444 / 1e-137 receptor like protein 1 (.1.2.3) Potri.003G013200 [exp] 1264 / 0 AT2G25470 453 / 6e-144 receptor like protein 21 (.1) Potri.003G026308 [exp] 1249 / 0 AT1G74190 423 / 1e-130 receptor like protein 15 (.1) Potri.003G025100 [exp] 1245 / 0 AT1G74190 432 / 2e-135 receptor like protein 15 (.1) Potri.003G013700 [exp] 1219 / 0 AT2G25470 366 / 2e-110 receptor like protein 21 (.1) Potri.005G013200 [exp] 1188 / 0 AT1G58190 453 / 1e-142 receptor like protein 9 (.1.2) Potri.005G006701 [exp] 1154 / 0 AT1G74190 438 / 3e-136 receptor like protein 15 (.1) Potri.003G028557 [exp] 1115 / 0 AT1G07390 388 / 1e-117 receptor like protein 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030068 [exp] 427 / 1e-134 AT5G49290 397 / 3e-124 receptor like protein 56 (.1) Lus10042381 [exp] 328 / 1e-96 AT1G74190 289 / 1e-82 receptor like protein 15 (.1) Lus10016340 [exp] 256 / 3e-71 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10027856 [exp] 249 / 6e-69 AT1G74190 272 / 1e-77 receptor like protein 15 (.1) Lus10016337 [exp] 247 / 5e-68 AT2G34930 471 / 6e-151 disease resistance family protein / LRR family protein (.1) Lus10011039 [exp] 248 / 3e-67 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10016339 [exp] 244 / 4e-67 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10006948 [exp] 240 / 1e-66 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10002742 [exp] 234 / 1e-63 AT1G58190 399 / 6e-124 receptor like protein 9 (.1.2) Lus10002755 [exp] 234 / 1e-63 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.005G013800.1 pacid=42802697 polypeptide=Potri.005G013800.1.p locus=Potri.005G013800 ID=Potri.005G013800.1.v4.1 annot-version=v4.1 ATGATGATGAAAAAAAAGTGGGTTTGGCTGTTGCTAACATTATTGACTTCGGTTGGCGAATGGTATGGTCGTTGTTGTGGGTGCTTGGAGGAAGAGAGAA TTGGTCTCTTGGAGATCAAAGCTTTGATCGATCCAAACAGCGTTCAAGGGGAATTGAGCGACTGGATGGACAACAAAGAGGATATTGGTAATTGCTGTGA GTGGTCTGGGATCGTGTGTGATAACACTACAAGGCGAGTGATCCAACTCTCTCTTATGCGTGCAAGGGATTTCCGCTTGGGCGATTGGGTTCTCAACGCA TCTCTGTTTCTGCCTTTTAAAGAATTGCAGAGTCTTGATTTGGGAGAGACTGGATTAGTTGGTTGCTCTGAGAATGAAGGCTTCGGAACCCTATCATCAA AACTGAGGAAACTGCGTGCCCTTGACCTCAGTTATAATAAATTTTATAGTGACAGCATTTTATCATGTTTGACTGGGTTTTCATCTCTCAAGTCTTTAGA TTTGTCATGGAATACGTTGACAGGATCGGCTAACTTTTATGGTCTCAACGTCTTGTCATCAAGGTTGAAGAAACTGGAGAACCTTCACCTGAGAGGGAAT CAATACAATGATAGCATTTTTTCATCTCTAATAGGATTTTCATCTCTAAAGTCTTTAGATTTGTCATACAACATGTTGACAGGATCTACCAGTATCAACG GGACTTTCTTCAATTCGACCACCCTTGAAGAATTGTATCTAGATGGTAGTTCTCTCCCATTAAACTTTCTCCATAATATTGGAGTATTGCCTGCTCTTAA AGTTTTGTCTGCCGGTGAATGTGACCTCAATGGCACCCTACTCGCTCAAGGTTTGTGTGGATTGAAGAGTCTAGAGCAGTTATTTCTCTCTGAAAATAAT CTAGAGGGTTCACTCCCAGATTGTTTCAAAAACTTGTCATCTCTACAACTATTAGATGTTTCGAGAAATCAATTTACTGGAAATATTGCTTCTAGTCCTC TTACAAACCTCTTATCCCTTGAATTCATCTCACTATCAAATAACCACTTCCAAGTTCCAATTTCAATGAAGCCTTTTATGAACCACTCAAGCCTCAGGTT TTTCTTCAGTGACAACAACAGACTAGTAACGGAACCCATGTCCTTTCATGATTTGATTCCAAAGTTTCAACTAGTCTTTTTCAGCTTGTCAAAAAGTTCA TCGGAAGCACTCAATGTAGAAACTCCCAGCTTCCTCTATAACCAACATGACTTAAGAGTCCTTGATCTCTCTCAAAACAGCTTCATTGGAATGTTCCCAT CGTGGTTGCTTAAGAACAATACAAGATTGGAGCAACTATTTCTGAATGAGAACTCCTTTTTTGGTGCCTTGCAATTGCAAGATCACCCGAATCCAGATAT GACCGCAATAGATATATCGAACAACAACATGCACGGTGAAATTCCAAAAAATATTTGTTTGATTTTTTCAAATATGTGGACCTTAAGGATGGCTAAGAAT GGACTCACAGGTTGTATTCCTTCTTGTTTAGGAAATATTAGCTCTCTAGGAGTTTTAGATTTATCCAACAATCAATTGTCTATGGTAGAACTAGAACAGT TTATAACATTAACGTTTCTCAAGCTTTCAAACAACAATTTAGGTGGGCAATTACCTGCCTCAATGGTCAATTCTTCTAGACTGAATTATCTCTACCTAAG CGACAACAATTTTTGGGGTCAGATATCAGATTTTCCATCACCCATAAGGACAATGTGGCATGTATTGGATTTGAGTAACAATCAATTTTCAAGCATGCTT CCAAGGTGGTTTGTCAATTTGACGCAAATCTTCGCAATTGATTTGTCCAAAAACCATTTTAATGGTCCAATTCCAGTAGAATTTTGTAAGCTTGACGAGC TTACATACTTGGACCTTTCTGAGAACAACTTGTTTGATTCTATACCATCTTGTTTCAATCCCCCACATATAACCTATGTGCATCTATCAAAAAATAGATT GAGTGGTCCATTAACATATGGATTTTATAACAGTTCTTCCCTTGTTACATTGGATCTCCGAGATAACAACTTCACCGGCTCCATCTCAAATTGGATTGGC AATCTTTCATCATTGAGTGTTCTTCTTTTGAGAGCTAATAATTTTGACGGTGAGTTTCTTGTTCAGTTATGCTTGTTAGAACAATTAAGCATTTTGGATG TTTCACAAAATCAGCTCTCTGGTCCACTACCATCATGTTTAGGCAATCTTAGTTTCAAGGAAAGTTATGAGAAAGCATCAGTGGATTTCGGATTTCATTT TGGATCAACACCCATAGAAAAAGCTTATTATGAATTCAACCAAACCAGAGCTCTCTTGGGAAGCAGTTATATACCCATTACTACAGAAGAAGTGATAGAA TTTACAGCTAAAAGTATGTATTATGGTTACAAGGGAAAAATTCTCAGCTTCATGTCTGGTATTGATCTCTCCAGCAACAAATTCTCAGGAGCAATCCCAC CAGAATTGGGAAACTTAAGTGAGCTATTAGCATTAAACTTGTCACACAACAATCTCACCGGATCTATCCCTGCAACATTCTCAAACTTAAAGCAGATAGA GAGTTTGGATCTTTCTTACAACAACTTGGACGGTGTCATCCCTCATAAACTTTATGAAATAACCACACTAGAAGTTTTTAGTGTGGCACACAATAACTTG TCAGGTGAAACTCCAGAGAGAAAATATCAGTTTGGGACCTTCGATGAAAGCAGTTATGAAGGAAATCCTTTTTTGTGTGGACCTCCATTGCAAAACAATT GTAGTGAAGAAGAATCACCATCACTGCCAATGCCTAATGATGAACAAGAAGATGATGGTTTCATAGACATGAATTTTTTCTACATCAGTTTGGGTGTAGG TTACATAGTTGTGGTGATGGGGATTGCAGCAGTTCTCTACATCAATCCATATTGGCGACGTGGGTGGTTTAACTTCATTGATTACTGCATAGATACTTGT TTCAATTTTCTGCTGGCTAGTTTTTGCAAGGTCTCCAACTTTAGAAGGTAA
AA sequence Show only first row Show all	>Potri.005G013800.1 pacid=42802697 polypeptide=Potri.005G013800.1.p locus=Potri.005G013800 ID=Potri.005G013800.1.v4.1 annot-version=v4.1 MMMKKKWVWLLLTLLTSVGEWYGRCCGCLEEERIGLLEIKALIDPNSVQGELSDWMDNKEDIGNCCEWSGIVCDNTTRRVIQLSLMRARDFRLGDWVLNA SLFLPFKELQSLDLGETGLVGCSENEGFGTLSSKLRKLRALDLSYNKFYSDSILSCLTGFSSLKSLDLSWNTLTGSANFYGLNVLSSRLKKLENLHLRGN QYNDSIFSSLIGFSSLKSLDLSYNMLTGSTSINGTFFNSTTLEELYLDGSSLPLNFLHNIGVLPALKVLSAGECDLNGTLLAQGLCGLKSLEQLFLSENN LEGSLPDCFKNLSSLQLLDVSRNQFTGNIASSPLTNLLSLEFISLSNNHFQVPISMKPFMNHSSLRFFFSDNNRLVTEPMSFHDLIPKFQLVFFSLSKSS SEALNVETPSFLYNQHDLRVLDLSQNSFIGMFPSWLLKNNTRLEQLFLNENSFFGALQLQDHPNPDMTAIDISNNNMHGEIPKNICLIFSNMWTLRMAKN GLTGCIPSCLGNISSLGVLDLSNNQLSMVELEQFITLTFLKLSNNNLGGQLPASMVNSSRLNYLYLSDNNFWGQISDFPSPIRTMWHVLDLSNNQFSSML PRWFVNLTQIFAIDLSKNHFNGPIPVEFCKLDELTYLDLSENNLFDSIPSCFNPPHITYVHLSKNRLSGPLTYGFYNSSSLVTLDLRDNNFTGSISNWIG NLSSLSVLLLRANNFDGEFLVQLCLLEQLSILDVSQNQLSGPLPSCLGNLSFKESYEKASVDFGFHFGSTPIEKAYYEFNQTRALLGSSYIPITTEEVIE FTAKSMYYGYKGKILSFMSGIDLSSNKFSGAIPPELGNLSELLALNLSHNNLTGSIPATFSNLKQIESLDLSYNNLDGVIPHKLYEITTLEVFSVAHNNL SGETPERKYQFGTFDESSYEGNPFLCGPPLQNNCSEEESPSLPMPNDEQEDDGFIDMNFFYISLGVGYIVVVMGIAAVLYINPYWRRGWFNFIDYCIDTC FNFLLASFCKVSNFRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G013800 [exp]	0	1
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G028500 [exp]	2.82	0.8684
AT1G10340			Ankyrin repeat family protein ...		Potri.018G042200 [exp]	5.47	0.8823
AT1G47890		AtRLP7	receptor like protein 7 (.1)		Potri.012G028600 [exp]	9.00	0.8555
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G005100 [exp]	10.58	0.8316
AT4G31800	WRKY	ATWRKY18, WRKY1...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G263600 [exp]	13.41	0.8668
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G178050 [exp]	13.96	0.8811
AT3G13080		EST2, ATMRP3, A...	MULTIDRUG RESISTANCE PROTEIN 3...		Potri.001G362300 [exp]	14.28	0.8488	Pt-MRP3.1
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082300 [exp]	15.68	0.8656
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.017G009500 [exp]	22.51	0.8477
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G025100 [exp]	22.58	0.8425

Compare expression of checked genes

Potri.005G013800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.