Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56460 250 / 2e-76 HIT zinc finger ;PAPA-1-like conserved region (.1.2) AT2G47350 234 / 2e-70 HIT zinc finger ;PAPA-1-like conserved region (.1.2) AT3G06660 215 / 7e-64 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008300 [exp] 810 / 0 AT2G47350 268 / 3e-83 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.014G119600 [exp] 356 / 1e-116 AT2G47350 272 / 1e-84 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.002G195132 [exp] 286 / 1e-92 AT1G56460 236 / 5e-74 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Potri.008G106200 [exp] 246 / 7e-76 AT3G06660 204 / 4e-61 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) Potri.010G144000 [exp] 43 / 0.0001 ND /
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010914 [exp] 470 / 2e-161 AT1G56460 356 / 3e-117 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Lus10031419 [exp] 457 / 2e-156 AT1G56460 349 / 9e-115 HIT zinc finger ;PAPA-1-like conserved region (.1.2) Lus10016899 [exp] 219 / 2e-65 AT3G06660 214 / 1e-64 PAPA-1-like family protein / zinc finger (HIT type) family protein (.1) Lus10037760 [exp] 217 / 2e-64 AT1G56460 209 / 9e-63 HIT zinc finger ;PAPA-1-like conserved region (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04438 [poplar] [flax] zf-HIT HIT zinc finger CL0175 [poplar] [flax] PF04795 [poplar] [flax] PAPA-1 PAPA-1-like conserved region
Representative CDS sequence Show only first row Show all	>Potri.005G014000.5 pacid=42804696 polypeptide=Potri.005G014000.5.p locus=Potri.005G014000 ID=Potri.005G014000.5.v4.1 annot-version=v4.1 ATGGAGGGTTTTGCGTTTAGTGATGCAAGCAGTGCTGTCAGGAAGAAGAGGAGTAATACATCCCGTCGACCACGGAATGAATCGCATGCACCTTCAGGTT ACATTGATGTTTCATCCTTATCATCCACACCACCTTCAGAAACTAATATGATGAAGAATGAAGATGGAGGATTTGGAGAATCCGATGAAGCTTCCAATAA TGGTTCTTTTCGAGGAAGCAGTGAGCGAAGGCGCAGTGGAGTTGATTCTAGAAGGTTGAGCCAAGGTGTCCTTGCCCCAGCTAATTGGAAAAGCACAAGT AGTAGCTTGGGCCATGTTGGAGGTTTTTCAGATGGAGTAGGAAATGAAAGTAAAGTAAAAAAAGTTAAGCTAAAAGTTGGTGGTATCACACGTACTATTA CTGCAAAGTCTGCATCTGATGGTGCATCTGCTGTTGCTGTTGGGTCTTCTTCTTCAAAATCTTCTCGCTTCCCAGATCCCCGGCAGAAGACAGTTGAGGA GAATTTGGACAACAACCATTCCCTTACTTCAGGTAAGGGAAGTGGTTTGCAAGGAGTCCCATGGAAGGATTTCTCTAGAAGTGGTCTAAATGATGGGAAA TCAGATGGTTTGAGAGGTGAGAATCTGTCTTCAAAGCAAACTGATCAGTCTGAGCCAGTTCGTAAGAGTAAGCGGCTCCCTAAGAAACGCCTATTAGATG GAGTTCTTGACGATGGAGCTGAGGATGATGATGAGATTCAGTTCCTTGAAAAAGTCAAGACATCGAAGATCAGCACTAATTATGGTGCAGGGTTTGAAGA TGAAGAGGGAGGAAGCAGGAAACAGCGGAAGATATTGAGAGTATTGAAGAGAAATGTTGATGGTCTGAATGATGTAGATGCTGGAGTTCATGGCCCAACT AGGTTTGGCAAGGAGGGTAAGAAATCTAAATCAGGGAGAGTATCTGAAGATACTGATTATGTGGAAGATGAAGATCTGGGCTCGGATGGTGACCCTACAG CGAAGAGGAAGAAGCCAAGAAAAGAGTTAGCTGATCTATCAGCAGACTCTAAGAAGGAAAGGACAGTCACTACCCGTCAACGAGCACTTCAAACTGGCAA AGATGTCTCCTCTGGTTTTGCTAGTTTGATAGAGTTCCCAAATGGGTTACCTCCAGCTCCTCCTAAAAAGCAAAAGGAGAAACTCTCTGAAGTGGAGCAG CAATTGAAGAGAGCTGAGGCTCTTCAAAGACGTAGGATGCAAGTTGAAAAGGCAAATAGGGAATCTGAGGCGGAGGCAATAAGAAAAATACTGGGCCAAG ATTCCACTAGGAAGAAGCGTGAAGATAAACTGAAGAAACGACAAGAAGAAATGGCACAGGAGAAAGCTACAAACGCCATGGTACTTGCATCAGACCATGT TAGGTGGGTCATGGGTCCAGCAGGAACAACTGTAACATTCCCCACTGAAATGGGCTTGCCAAGTATATTCGACTCCAAGCCTTGCAGTTACCCTCCTCCC CGGGAGAAATGTGCTGCTCCATCTTGTACAAATCCATACAAGTATCGGGATTCCAAGTCAAAACTACCCCTTTGTAGTCTCCATTGCTACAAGACGATTC ATGAGAAGATGCAACCTCTTACTGCTTGTTAG
AA sequence Show only first row Show all	>Potri.005G014000.5 pacid=42804696 polypeptide=Potri.005G014000.5.p locus=Potri.005G014000 ID=Potri.005G014000.5.v4.1 annot-version=v4.1 MEGFAFSDASSAVRKKRSNTSRRPRNESHAPSGYIDVSSLSSTPPSETNMMKNEDGGFGESDEASNNGSFRGSSERRRSGVDSRRLSQGVLAPANWKSTS SSLGHVGGFSDGVGNESKVKKVKLKVGGITRTITAKSASDGASAVAVGSSSSKSSRFPDPRQKTVEENLDNNHSLTSGKGSGLQGVPWKDFSRSGLNDGK SDGLRGENLSSKQTDQSEPVRKSKRLPKKRLLDGVLDDGAEDDDEIQFLEKVKTSKISTNYGAGFEDEEGGSRKQRKILRVLKRNVDGLNDVDAGVHGPT RFGKEGKKSKSGRVSEDTDYVEDEDLGSDGDPTAKRKKPRKELADLSADSKKERTVTTRQRALQTGKDVSSGFASLIEFPNGLPPAPPKKQKEKLSEVEQ QLKRAEALQRRRMQVEKANRESEAEAIRKILGQDSTRKKREDKLKKRQEEMAQEKATNAMVLASDHVRWVMGPAGTTVTFPTEMGLPSIFDSKPCSYPPP REKCAAPSCTNPYKYRDSKSKLPLCSLHCYKTIHEKMQPLTAC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56460			HIT zinc finger ;PAPA-1-like c...		Potri.005G014000 [exp]	0	1
AT4G20850		TPP2	tripeptidyl peptidase ii (.1)		Potri.012G142200 [exp]	1.73	0.7659
AT1G73930			unknown protein		Potri.012G060200 [exp]	2.82	0.7878
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.010G001400 [exp]	6.00	0.7061
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.002G157500 [exp]	6.70	0.7011
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.001G096100 [exp]	11.66	0.6734
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Potri.007G074800 [exp]	12.48	0.6794
AT2G46180		GC4	golgin candidate 4 (.1)		Potri.002G165500 [exp]	13.11	0.7622
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.010G217900 [exp]	16.73	0.7102
AT5G20590		TBL5	TRICHOME BIREFRINGENCE-LIKE 5 ...		Potri.018G133000 [exp]	16.91	0.7069
AT5G49880			mitotic checkpoint family prot...		Potri.003G000900 [exp]	17.54	0.7030

Compare expression of checked genes

Potri.005G014000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.