Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56440 476 / 1e-165 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G17970 100 / 3e-22 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 86 / 1e-17 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT2G42810 74 / 7e-14 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT4G08320 72 / 2e-13 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G53300 68 / 6e-12 TTL1 tetratricopetide-repeat thioredoxin-like 1 (.1) AT1G12270 67 / 8e-12 Hop1 Hop1, stress-inducible protein, putative (.1) AT3G17880 67 / 1e-11 ATHIP2, ATTDX HSC-70 INTERACTING PROTEIN, ARABIDOPSIS THALIANA HSP70-INTERACTING PROTEIN 2, tetraticopeptide domain-containing thioredoxin (.1.2) AT4G12400 67 / 1e-11 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G62740 66 / 3e-11 Hop2 Hop2, stress-inducible protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008400 [exp] 762 / 0 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.012G046900 [exp] 99 / 4e-22 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.015G038600 [exp] 96 / 4e-21 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 86 / 2e-17 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.014G141800 [exp] 73 / 2e-13 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.005G177400 [exp] 71 / 7e-13 AT4G08320 406 / 1e-139 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G166300 [exp] 69 / 5e-12 AT5G65160 436 / 5e-145 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.001G119500 [exp] 68 / 6e-12 AT4G12400 864 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.002G255300 [exp] 67 / 7e-12 AT1G04130 470 / 5e-167 tetratricopeptide repeat 2, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031418 [exp] 471 / 3e-164 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10010915 [exp] 464 / 5e-162 AT1G56440 412 / 2e-141 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10042001 [exp] 99 / 1e-21 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10018004 [exp] 97 / 3e-21 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009682 [exp] 92 / 9e-20 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009050 [exp] 77 / 1e-14 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10025656 [exp] 74 / 3e-14 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018179 [exp] 74 / 5e-14 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10022500 [exp] 69 / 3e-12 AT5G65160 652 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10028154 [exp] 69 / 5e-12 AT1G53300 754 / 0.0 tetratricopetide-repeat thioredoxin-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.005G014100.2 pacid=42804140 polypeptide=Potri.005G014100.2.p locus=Potri.005G014100 ID=Potri.005G014100.2.v4.1 annot-version=v4.1 ATGGCTAGGGTTCCAGGCAAGCATGGACGTGATCAAGCCCTGGATTTCCAGGGGTTTTTGAATGATTTGCAGGACTGGGAGCTTCTTAAGGATACTGATA AAAAGATGAAGAAGAAGTCACGAGCTTCTGATGTGAAGATTGGTGAGGATGGAAGATCAAAAGGAAAAACTTCTGCTGCTGATTCTTCTAGAAGTGGTTC AGGACAGTATGAGTACTCAAGGAACTTTGGTGCAATCAATCGTCTATCAAGTAGTTTTACAACTGATGAGATTACTGTGGATGCTACCACAGAGAAAGAA TTGGGAAATGAATATTTTAAGCAGAAGAAGTTTAATGAAGCTATTGAGTGTTATTCAAGAAGCATAGCCTTGTCACCAACAGCTGTAGCCTATGCAAATA GGGCAATGGCATATCTCAAAATCAAAAGATTTCGAGAGGCTGAAGATGACTGTACAGAGGCTTTGAATCTAGATGATCGCTACATAAAAGCGTATTCACG CAGAGCAACGGCTAGAAAGGAATTGGGGAAACTTAAAGAATCCATCGAGGATTCTGAATTTGCTTTGAAGTTGGAACCTAATAACCAGGAAATCAAGAAA CAGTATGCTGAAGTCAAATCTTTGTATGAGAAGGAAATTCTCCAGAAAGCATCTGGCACTCTCAGAAGCTCTTTACAAGGAACACAACAAGGAGGAAGGT CAGAAGCAAGTGTAAATGGACATGCAGTGCATCCAGTCTCGATTGCCACTCAAAAGACTGGGGTCTCTGCGTCTAAAAAAGATAACACCAAGGAGAATGA TGGAAACAATCTTGTGAAGAAATCAGTGCATGTGAAAGAATTAAGGAACAGAAGCAAATCTGATGGTCATGTAGGCAATGATTCTCCTGCAAATGCCACT CCGAGTTCCAGTGTAGAGAGTGTCCAGAAAAATAATAGAACTCGAAGACAAGAGCTGAAGACCTCAGTAATAGAACTTGCTTCTCAAGCAGCTTCTCGTG CCATGGCTGAAGCTGCAAAAAACATTACTCCTCCAAACTCGGCTTATCAATTTGAGGTTTCTTGGCAAGGCTTTTCTGGTGATCGTGCACTCCAGGCTCA CCTCTTGAAGGTTACTTCTCCAAGTGCATTGCCTCAGATATTTAAAAATGCATTGTCTGTTCCTATTCTAATCGACATCATCAAGTGTGTGGCCTCCTTC TTCATCGATGACATGGTTTTGGCTGTCAAATATCTGGAGAACCTGACCAAAGTCCCAAGATTTGACATGCTTATCATGTGTCTTTCATCTACAGATACGT CTGATCTTCTCAAGATGTGGGATGGAGTCTTCTGTAGTGCATCAACGCCAATTGAATATGCTGAGATTCTTGACAACTTACGATCAAAATACTGTCCGAA ATGTTGA
AA sequence Show only first row Show all	>Potri.005G014100.2 pacid=42804140 polypeptide=Potri.005G014100.2.p locus=Potri.005G014100 ID=Potri.005G014100.2.v4.1 annot-version=v4.1 MARVPGKHGRDQALDFQGFLNDLQDWELLKDTDKKMKKKSRASDVKIGEDGRSKGKTSAADSSRSGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKE LGNEYFKQKKFNEAIECYSRSIALSPTAVAYANRAMAYLKIKRFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLKESIEDSEFALKLEPNNQEIKK QYAEVKSLYEKEILQKASGTLRSSLQGTQQGGRSEASVNGHAVHPVSIATQKTGVSASKKDNTKENDGNNLVKKSVHVKELRNRSKSDGHVGNDSPANAT PSSSVESVQKNNRTRRQELKTSVIELASQAASRAMAEAAKNITPPNSAYQFEVSWQGFSGDRALQAHLLKVTSPSALPQIFKNALSVPILIDIIKCVASF FIDDMVLAVKYLENLTKVPRFDMLIMCLSSTDTSDLLKMWDGVFCSASTPIEYAEILDNLRSKYCPKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Potri.005G014100 [exp]	0	1
AT5G08710		RUG1	RCC1/UVR8/GEF-like 1, Regulato...		Potri.005G071000 [exp]	6.40	0.8320
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.001G184200 [exp]	10.09	0.8724
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Potri.004G188900 [exp]	13.41	0.8603
AT4G21300			Tetratricopeptide repeat (TPR)...		Potri.011G156800 [exp]	14.42	0.8287
					Potri.009G092750 [exp]	17.49	0.8510
AT1G16810			unknown protein		Potri.005G174400 [exp]	18.97	0.8750
					Potri.003G089201 [exp]	19.59	0.8382
AT1G11900			Tetratricopeptide repeat (TPR)...		Potri.009G067400 [exp]	21.21	0.8089
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Potri.016G075500 [exp]	22.49	0.7730
AT3G24100			Uncharacterised protein family...		Potri.014G056600 [exp]	23.97	0.8435

Compare expression of checked genes

Potri.005G014100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.