Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09240 405 / 2e-142 ATNAS3 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) AT1G56430 400 / 2e-140 ATNAS4 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) AT5G04950 378 / 7e-132 ATNAS1 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1) AT5G56080 377 / 1e-131 ATNAS2 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 2, nicotianamine synthase 2 (.1) AT4G26483 79 / 2e-18 nicotianamine synthases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143100 [exp] 386 / 7e-136 AT1G09240 362 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, nicotianamine synthase 3 (.1) Potri.004G193400 [exp] 290 / 1e-97 AT5G04950 280 / 6e-94 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, nicotianamine synthase 1 (.1) Potri.010G143133 [exp] 77 / 3e-17 AT1G56430 76 / 5e-17 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029843 [exp] 408 / 1e-143 AT1G56430 364 / 2e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10020696 [exp] 405 / 3e-142 AT1G56430 364 / 4e-126 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10031416 [exp] 363 / 3e-126 AT1G56430 340 / 2e-117 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1) Lus10010917 [exp] 359 / 6e-125 AT1G56430 334 / 5e-115 ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 4, nicotianamine synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03059 [poplar] [flax] NAS Nicotianamine synthase protein
Representative CDS sequence Show only first row Show all	>Potri.005G014300.1 pacid=42805430 polypeptide=Potri.005G014300.1.p locus=Potri.005G014300 ID=Potri.005G014300.1.v4.1 annot-version=v4.1 ATGGTTTGCCAGAAAGAACCTCTTGTACAGAAAGTCTGCGATCTGTATGAGCAAATCTCAAGCCTTGAGAGTCTCAAACCCTCCAAAGATGTCGACATGC TCTTCACACAACTTGTTCTCACGTGCATCCCACCAAACCCTATCGATGTCAACAAGCTTTGCAAGAAAATTCAAGAAATGAGGTCTAAGCTCATTAGACT TTGTGGAGAAGCCGAAGGACATTTAGAGAGTCATTTCTCTGCTATCCTAGGGTCCTATGAAAACCCTCTTGACCATCTCAATGTCTTTCCATATTATTCA AACTACCTTAAGCTTAGCCACCTTGAGTTTAACATCCTCAAGCAACACTGCACGAATGTCCCTAGCAAAGTTGCGTTTGTGGGTTCCGGTCCGCTTCCCT TATCTTCAATTGTGTTAGCCTGTAATCACCTCACCGCAACTTCCTTCCACAACTATGATGTTGACCCTTCAGCCAATTCAAAGGCTCTTCAATTAGTCAC GTCTCATCCTGACTTGTCGAGTAGAATGTTCTTTCACACGACCGATATAATGGATGTGACAAGTGAGCTTCAAGAGTTTGATGTCGTCTTCTTGGCAGCT TTAGTTGGGATGGACAAGGAGGAGAAGGTTAAGGTCATTGATCATTTGGCTAAGCAGATGGCTCCTGGTGCTATATTGATGCTGAGGAGTGCTCATGGAG CTAGGGCTTTTCTCTACCCAGTGATTGATCCTTGTGATCTTCGAGGATTCGAGGTCCTCTCTGTGTTTCATCCAAGTGATGAGGTGATAAACTCGGTTGT CATCGCTCGTAAATATTCAATGCCTATAAATTCAATCGATCATCAGCAAACTGGTCTTGGCTCCATGATAGTACTGCCTAACAAGTGTTGTGAGATCCTG TCCTTCAATCCCCTCAGCCATGTTACCATGGTTGAAGAGTTGGCCGTTGAGGAGCAACACTCATAA
AA sequence Show only first row Show all	>Potri.005G014300.1 pacid=42805430 polypeptide=Potri.005G014300.1.p locus=Potri.005G014300 ID=Potri.005G014300.1.v4.1 annot-version=v4.1 MVCQKEPLVQKVCDLYEQISSLESLKPSKDVDMLFTQLVLTCIPPNPIDVNKLCKKIQEMRSKLIRLCGEAEGHLESHFSAILGSYENPLDHLNVFPYYS NYLKLSHLEFNILKQHCTNVPSKVAFVGSGPLPLSSIVLACNHLTATSFHNYDVDPSANSKALQLVTSHPDLSSRMFFHTTDIMDVTSELQEFDVVFLAA LVGMDKEEKVKVIDHLAKQMAPGAILMLRSAHGARAFLYPVIDPCDLRGFEVLSVFHPSDEVINSVVIARKYSMPINSIDHQQTGLGSMIVLPNKCCEIL SFNPLSHVTMVEELAVEEQHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09240		ATNAS3	ARABIDOPSIS THALIANA NICOTIANA...		Potri.005G014300 [exp]	0	1
AT1G03670			ankyrin repeat family protein ...		Potri.013G133400 [exp]	9.89	0.9722
AT4G31980			unknown protein		Potri.003G209832 [exp]	27.94	0.9615
AT1G65810			P-loop containing nucleoside t...		Potri.017G140400 [exp]	32.61	0.9295
AT3G14470			NB-ARC domain-containing disea...		Potri.006G275800 [exp]	34.01	0.9613
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G141125 [exp]	35.70	0.9594
AT1G03670			ankyrin repeat family protein ...		Potri.018G077633 [exp]	36.37	0.9576
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.012G120160 [exp]	36.44	0.9267
AT3G28150		AXY4L, TBL22	ALTERED XYLOGLUCAN 4-LIKE, TRI...		Potri.011G144100 [exp]	43.26	0.9594
AT1G58400			Disease resistance protein (CC...		Potri.010G044601 [exp]	43.37	0.9252
AT1G03670			ankyrin repeat family protein ...		Potri.013G133700 [exp]	43.98	0.9531

Compare expression of checked genes

Potri.005G014300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.