Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09820 695 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G05670 324 / 2e-99 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G39710 306 / 2e-92 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G09900 269 / 2e-80 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63130 266 / 9e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G11690 261 / 7e-78 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 263 / 1e-77 RPF2 rna processing factor 2 (.1) AT1G62930 263 / 1e-77 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G15630 262 / 2e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 267 / 4e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G035700 [exp] 325 / 9e-100 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.004G147700 [exp] 310 / 4e-95 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 307 / 4e-93 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G032600 [exp] 287 / 6e-87 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050400 [exp] 286 / 1e-86 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G257300 [exp] 285 / 5e-86 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046200 [exp] 283 / 3e-85 AT1G12700 501 / 5e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 282 / 3e-85 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 282 / 4e-85 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032789 [exp] 300 / 5e-95 AT1G09820 250 / 4e-78 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10027916 [exp] 303 / 2e-91 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 298 / 2e-89 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 300 / 2e-88 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 290 / 1e-87 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10007468 [exp] 286 / 3e-85 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012037 [exp] 283 / 1e-84 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003433 [exp] 267 / 1e-79 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 266 / 4e-79 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10039056 [exp] 267 / 8e-78 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G014500.1 pacid=42805559 polypeptide=Potri.005G014500.1.p locus=Potri.005G014500 ID=Potri.005G014500.1.v4.1 annot-version=v4.1 ATGCAGGGCTTTGCTTCCTACGAAACTCGAAAAACATCCACCACTTTCTCCTCCTCCTCCTTCAATGGAGACTCAAAATTAACAACAAAAAAGCACACAA TTTTCCTATTCTGCCCTTTACTTCCCTCAAACTCCCAACAACACAAGACAATGCTAAAGCTCCTGTCTTCCACTTCTCGCCAAATCCAAACCCACCTAAC ATCCCCATGTCTCCGAGTCAACACCGAGTCACAACCGAGTTCCTTTCTAAAGTCTCTGAGTTCACTCACGGGTTTGGCTCAGAGGAACCATAAAAGTCTT AGTTTTTATCAAAGAGCCTTCTTTTTCTCTGGTTCTTCTTCCGGCGATGGCGGCGATGGAGGTGGGTTTGCTGAGGTGGAGGTCAGGAGTGGTGCCAGCG AGACAGAGGCTGAAGTTGGTGCTGCGGATGCTAGTGATTCCTCGGCTATTGTGCCTACTAATCCTAGACCAGAGGATTGTTTAACGGTGTATAAATGTTT GAAACTCACTCTGGAGTTGGTGAAGAAAGAAATAGAAATCAGCAAGATCCAGGGAAGATTTCTACAAGGAACCATTTTCCCGAGAAACAAACAAGGAAAA AGGCAATTCTGTGCATTATCGTTAGACGAATCCCTCACCCCCACCATTACAAACATTATATCAAACCAACACTGGTCAAAACTCAAAGCCCATCTCCAAA ACACAGACCCCAACACACTCCTTCAACAGTTGCTCAATTCTGGAGCTGACCCAGAACTCATTTTAAGGTACTTTACTTGGTCACAGAAAGAGTTTAAGCT TTCACACTCACTAGAACTCACTTTTAGAATCTTAAACTCACTTGCACTTACCAAAAAGTATTCAAAGATTAGATCTTTTTTGGATAAGTTTGTTAAGTAC GAGAAGGATTATTCAGTTTCTGCTATATTTCATGCTATTTCTATGAGTGGTGATTCCTTTTGTGTTAATTCAATATTAGCTGATATGTTGGTATTAGCAT TTGTGCGAAATTTGAAGATTTTAAGGGGTTTCGAGGCATTTAAGAGAGCTGGTGATTATGGTTTTAAGCTGTCTTTGATTTCTTGTAATCCATTGTTGAG TGGTTTGGTTAAGGAGAGTGAAAATGGGGATATGGAGTTTGTGTATAGGGAAATGATTAAGAGGAAGATTGAGCTTAATGTAATTAGTTTTAATATTGTG GTTAATGGGTTGTTTAAAGTTGGGAAATTGAATAGGGCTGGTGATGTTATTGAGGATATGAAAGTGTGGGGAGTTTCTCCGAATGTGATTACATATAATA CTCTCATTGATGGGTATTGTAAGATGGGTAGAATTGGGAAGATGTATAAAGCTGATGCTATTTTGAAGGAGATGGTAGCGAAAGGAATTTGTCCAAATGA GGTTACTTATAATATTTTGATTGATGGGTTTTGCAAGGATGAGAATGTGTCAGGTGCTATGAGGGTGTTTGGAGAAATGCAAAGGCAGGGTTTGAGACCA AATGTTGTGACATATAATATACTGATTAATGGGTTGTGCAGTGATGGAAAGGTTGATGAGGCTGTTGCTTTACGGGATCAAATGGTTAGTTCTGATTTGG AGCCGAATGTTGTGACTCATAATGTGCTTATAAATGGCTTCTGTAAGAATAAAACAGTGAACGAAGCAATCAACTTATTTAATGATATGGAAAAACAAGG AGTAGATCCTAATGCCATGACATATACCACGCTGATTGATGCTTACTGTAAGGATGGAAGGATGGAAGATGCATTTGCACTATATAATATGATGATAGAT AGAGGGATTTTCCCTGAAGTTTCAACATACAACTGCTTGATTGCTGGTTTATGTAGTAAGGGAGATGTGAAAGCAGCCCGGAATCTTATGAATGAAATGG TCAGTAAGAAATTGAGTGCTGATGTTGTCACATATAACATACTGATAGATTCGTTATGCAAAAAAGGGGAATCGAGAAAGGCAGTGAAACTCTTGGATGA GATGTTTGAAAAAGGATTAAACCCAAGTCACGTGACATACAATACTTTGATGGATGGATATTGTAGGGAAGGAAATCTTCGGGCAGCATTGATTGTGAGG ACACGGATGGAGAGAAAAGGGAAACAAGCAAATGTTGTCACATACAATGTGCTGATCAAGGGTTTTTGTTTGAAGGGTAGGCTTGAAGATGCAAATGGGC TTCTCAATGAGATGTTGGAGAGGGGTTTGGTGCCTAATCGGACAACTTATGAGATTATTAAAGAGGAAATGATGGAGAAAGGGTTTGTTCCAGACATAGA AGGACATGTATATAATGTTTCTGACACCAACGTAAAGAGAAGATAA
AA sequence Show only first row Show all	>Potri.005G014500.1 pacid=42805559 polypeptide=Potri.005G014500.1.p locus=Potri.005G014500 ID=Potri.005G014500.1.v4.1 annot-version=v4.1 MQGFASYETRKTSTTFSSSSFNGDSKLTTKKHTIFLFCPLLPSNSQQHKTMLKLLSSTSRQIQTHLTSPCLRVNTESQPSSFLKSLSSLTGLAQRNHKSL SFYQRAFFFSGSSSGDGGDGGGFAEVEVRSGASETEAEVGAADASDSSAIVPTNPRPEDCLTVYKCLKLTLELVKKEIEISKIQGRFLQGTIFPRNKQGK RQFCALSLDESLTPTITNIISNQHWSKLKAHLQNTDPNTLLQQLLNSGADPELILRYFTWSQKEFKLSHSLELTFRILNSLALTKKYSKIRSFLDKFVKY EKDYSVSAIFHAISMSGDSFCVNSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIV VNGLFKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRP NVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMID RGIFPEVSTYNCLIAGLCSKGDVKAARNLMNEMVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVR TRMERKGKQANVVTYNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFVPDIEGHVYNVSDTNVKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09820			Pentatricopeptide repeat (PPR-...		Potri.005G014500 [exp]	0	1
AT5G15700			DNA/RNA polymerases superfamil...		Potri.004G111600 [exp]	3.00	0.8962
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.008G044000 [exp]	5.47	0.9102
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Potri.011G001100 [exp]	6.32	0.8866
AT3G25910			Protein of unknown function (D...		Potri.003G060800 [exp]	8.48	0.8947
AT3G08800		SIEL	SHORT-ROOT interacting embryon...		Potri.016G127500 [exp]	9.79	0.8699
					Potri.013G116750 [exp]	12.72	0.8796
AT2G01130			DEA(D/H)-box RNA helicase fami...		Potri.010G117800 [exp]	13.26	0.8614
AT1G03220			Eukaryotic aspartyl protease f...		Potri.006G068900 [exp]	17.23	0.8756
AT5G09420		MTOM64, ATTOC64...	outer membrane 64, ARABIDOPSIS...		Potri.001G205300 [exp]	17.43	0.7717
AT2G36240			pentatricopeptide (PPR) repeat...		Potri.006G068700 [exp]	20.14	0.8422

Compare expression of checked genes

Potri.005G014500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.