Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11330 454 / 5e-152 S-locus lectin protein kinase family protein (.1.2) AT4G21390 448 / 2e-149 B120 S-locus lectin protein kinase family protein (.1) AT1G11340 427 / 1e-140 S-locus lectin protein kinase family protein (.1) AT1G61610 424 / 4e-140 S-locus lectin protein kinase family protein (.1) AT1G11410 423 / 8e-140 S-locus lectin protein kinase family protein (.1) AT3G16030 416 / 3e-137 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT1G65800 415 / 9e-137 ARK2 receptor kinase 2 (.1) AT4G03230 418 / 3e-136 S-locus lectin protein kinase family protein (.1) AT4G21380 414 / 3e-136 ARK3 receptor kinase 3 (.1) AT1G11350 412 / 6e-136 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G014900 [exp] 907 / 0 AT4G21390 660 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.005G014700 [exp] 855 / 0 AT4G21390 671 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G134900 [exp] 735 / 0 AT4G21390 662 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125100 [exp] 476 / 8e-161 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G039100 [exp] 472 / 5e-159 AT1G11330 859 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G125050 [exp] 467 / 4e-157 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 466 / 8e-157 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 465 / 2e-156 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125301 [exp] 463 / 1e-155 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037865 [exp] 449 / 7e-150 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 447 / 5e-149 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10006745 [exp] 441 / 1e-148 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10018408 [exp] 446 / 7e-148 AT4G21390 936 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 442 / 2e-147 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 441 / 2e-146 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014812 [exp] 439 / 6e-146 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 434 / 3e-144 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10006746 [exp] 432 / 2e-143 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 431 / 8e-143 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.005G014802.1 pacid=42804896 polypeptide=Potri.005G014802.1.p locus=Potri.005G014802 ID=Potri.005G014802.1.v4.1 annot-version=v4.1 ATGTCGATTCTGACATTACCAGAAAATTCAAAAGCATATCAAAAAGTGAGTGTTGCAAGATGTAGATTGTATTGCATGAAAAATTGTTATTGCGTGGCTT ATGCCTATAATAGCAGTGGGTGTTTTTTATGGGAAGGAGATCTTATAAACTTAAAACAGTCAGAGATTGCTGCTGGGAGGGCTGGAGCAGAAATTTACAT CAGACTTGCTGCTTCTGAGCTTGAACCTCAGATTGGTAGTGGCAGTATCCGAACAGGAGGCAATATCAAATGGAAAATACGGACAACCTTGGCTGTGGCT GTTCCAGTAACTCTGATTACCTTAGGCCTCTTCACATACTTCAGCTGTCTGCGCAAGGGAAAGCTCATACACAAAGCGAAGGAACGTACAGGTCACAATT TATTGCGCTTTGATTTCGATGCCGATCCTAACTCAACTACCAATGAATCTAGCTCTGTTGACAATCGGAAGAAAAGATGGAGTAAAAATATAGAATTTCC ATTATTCAGTTATGAGAGCGTATCAGTTGCAACAGGACAGTTCTCAGATAAGCTAGGAGAGGGAGGATTCGGACCTGTTTATAAGGGCAAATTACCCACG GGACTGGAAATAGCAGTGAAGAGGCTTTCAGAAAGATCTGGGCAGGGGCTTGAGGAGTTCAGAAATGAGACAACTCTAATCGCCAAACTCCAGCACCGGA ATCTTGTCAGGCTACTGGGTTCCTGTATTGAACGGGATGAGAAAATGCTAATCTATGAGTACATGCCAAATAAAAGCTTGGATTTCTTTCTCTTTGATGC AAACAGAGGACAAATCTTAGATTGGGGTACACGGATTCGGATAATCGAAGGAATTGCTCAAGGCCTTCTGTATCTACATAGATACTCGCGGTTACGAATC ATTCACAGGGATTTAAAACCTAGCAACATTCTATTAGACAGTGAGATGAATCCAAAAATATCCGATTTCGGGATGGCTCGAATTTTCGGAGGCAACGAAA CTCAAGCACACACCAACAGGATCGTTGGAACATATGGCTATATGTCCCCTGAATATGCTATGGAGGGTCTCTTCTCAATAAAATCTGATGTGTTTAGCTT CGGGGTGCTGGTACTTGAGATTGTGAGCGGCAAGAAGAACACTAGTTTCTACCACAGCGACACCCTCCATCTTCTTGGACATGCATGGAAGTTATGGAAT TCTAATAAAGCTTTGGACTTGATGGATCCAATCCTGGGAGATCCTCCTTCAACGGCTACGCTGTTGAGATACATAAACATAGGGCTTCTTTGTGTCCAGG AAAGTCCTGCTGATCGGCCTACAATGTCTGATGTTATATCCATGATCGCAAACGAACACGTAGCTCTCCCAGAACCTAAGCAACCTGCTTTTGTTGCATG CAGAAACATGGCAGAACAAGGACCATTGATGAGCTCTTCTGGGGTACCTTCCGTGAATAATATGACAATAACGGCGATAGATGGGAGATAG
AA sequence Show only first row Show all	>Potri.005G014802.1 pacid=42804896 polypeptide=Potri.005G014802.1.p locus=Potri.005G014802 ID=Potri.005G014802.1.v4.1 annot-version=v4.1 MSILTLPENSKAYQKVSVARCRLYCMKNCYCVAYAYNSSGCFLWEGDLINLKQSEIAAGRAGAEIYIRLAASELEPQIGSGSIRTGGNIKWKIRTTLAVA VPVTLITLGLFTYFSCLRKGKLIHKAKERTGHNLLRFDFDADPNSTTNESSSVDNRKKRWSKNIEFPLFSYESVSVATGQFSDKLGEGGFGPVYKGKLPT GLEIAVKRLSERSGQGLEEFRNETTLIAKLQHRNLVRLLGSCIERDEKMLIYEYMPNKSLDFFLFDANRGQILDWGTRIRIIEGIAQGLLYLHRYSRLRI IHRDLKPSNILLDSEMNPKISDFGMARIFGGNETQAHTNRIVGTYGYMSPEYAMEGLFSIKSDVFSFGVLVLEIVSGKKNTSFYHSDTLHLLGHAWKLWN SNKALDLMDPILGDPPSTATLLRYINIGLLCVQESPADRPTMSDVISMIANEHVALPEPKQPAFVACRNMAEQGPLMSSSGVPSVNNMTITAIDGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11330			S-locus lectin protein kinase ...		Potri.005G014802 [exp]	0	1
AT5G40645			RPM1-interacting protein 4 (RI...		Potri.001G338500 [exp]	5.29	0.9112
AT1G75510			Transcription initiation facto...		Potri.002G028900 [exp]	8.60	0.8654
AT1G21280			unknown protein		Potri.006G109250 [exp]	8.71	0.8959
AT1G61250		SC3	secretory carrier 3 (.1.2)		Potri.004G036600 [exp]	9.00	0.8898
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.013G123000 [exp]	10.09	0.8999
AT2G37030			SAUR-like auxin-responsive pro...		Potri.016G091500 [exp]	16.27	0.8952
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Potri.004G074800 [exp]	17.49	0.8936
AT5G60010			ferric reductase-like transmem...		Potri.006G097200 [exp]	17.74	0.8689
					Potri.014G182232 [exp]	19.18	0.8596
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G220150 [exp]	19.44	0.8831

Compare expression of checked genes

Potri.005G014802 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.