Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56340 565 / 0 AtCRT1a, CRT1 calreticulin 1a (.1.2) AT1G09210 561 / 0 AtCRT1b calreticulin 1b (.1) AT1G08450 427 / 3e-148 AtCRT3, PSL1, EBS2, CRT3 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) AT5G61790 194 / 1e-56 CNX1, ATCNX1 calnexin 1 (.1) AT5G07340 180 / 4e-51 Calreticulin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009500 [exp] 602 / 0 AT1G09210 579 / 0.0 calreticulin 1b (.1) Potri.019G055200 [exp] 447 / 4e-156 AT1G08450 569 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.017G026300 [exp] 435 / 3e-151 AT1G08450 615 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.007G131500 [exp] 433 / 2e-150 AT1G08450 619 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Potri.015G109200 [exp] 188 / 4e-54 AT5G61790 710 / 0.0 calnexin 1 (.1) Potri.012G111100 [exp] 179 / 7e-51 AT5G61790 677 / 0.0 calnexin 1 (.1) Potri.001G070600 [exp] 145 / 1e-38 AT5G61790 582 / 0.0 calnexin 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010924 [exp] 577 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031409 [exp] 563 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10031410 [exp] 563 / 0 AT1G56340 621 / 0.0 calreticulin 1a (.1.2) Lus10010923 [exp] 560 / 0 AT1G56340 616 / 0.0 calreticulin 1a (.1.2) Lus10020222 [exp] 433 / 2e-149 AT1G08450 586 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10026849 [exp] 432 / 1e-147 AT1G08450 590 / 0.0 PRIORITY IN SWEET LIFE 1, EMS-MUTAGENIZED BRI1 SUPPRESSOR 2, A. thaliana calreticulin 3, calreticulin 3 (.1.2.3) Lus10043021 [exp] 194 / 2e-56 AT5G61790 793 / 0.0 calnexin 1 (.1) Lus10032521 [exp] 193 / 5e-56 AT5G61790 794 / 0.0 calnexin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [poplar] [flax] Concanavalin PF00262 [poplar] [flax] Calreticulin Calreticulin family
Representative CDS sequence Show only first row Show all	>Potri.005G015100.2 pacid=42803148 polypeptide=Potri.005G015100.2.p locus=Potri.005G015100 ID=Potri.005G015100.2.v4.1 annot-version=v4.1 ATGGGAAACCCTAAAACTCTCTCTCTCTCTCTGATTCTCTTTTCTCTCTTCGCGATCACATCTGCTAAAGTCTTCTTCGAAGAACGCTTCGAAGATGGAT GGGAGAATAGATGGGTTGTATCTGATTGGAAGAAAGATGAGAACACCGCCGGGGTCTGGAACCATACTTCTGGAAAATGGAACGGAGACGCTAATGACAA AGGTATCCAAACAAGTGAAGACTACAGGTTCTATGCTATTTCAGCTGAGTTCCCTGAATTCAGCAACAAGGATCAGACACTTGTTTTCCAATTCTCCGTC AAGCATGAGCAAAAGCTTGATTGTGGTGGTGGCTACCTGAAGTTGCTCAGTGGTGAAGTTGACCAGAAGAAATTTGGTGGTGATACCCCGTACAGTATCA TGTTTGGACCAGATATCTGTGGACACAGCACCAAGAAAGTTCATGCCATTCTTAACTACAATGAAACAAACCAGTTGATCAAGAAGGAAGTTCCCTGTGA GACTGACCAACTCTCTCATGTCTACACATTTATCATCCGTCCCGATGCTACATACAGTATCCTTATTGACAATGTAGAGAAGCAAACTGGCAGTTTGTAC ACTGACTGGGATCTTCTCCCGCCGAAGCAAATCAAGGATCCTGAGGCCAAGAAACCTGAAGACTGGGATGACAAGGAGTATATTCCTGATCCTGAAGACA AGAAGCCAGAGGGTTATGATGACATTCCCAAAGAACTTCCAGATCCTGATGCCAAAAAGCCTGAGGACTGGGATGATGAGGAAGATGGTGAGTGGACTGC CCCAACCATTCCCAATCCTGAGTACAATGGCCCGTGGAAGCCAAAGAAAATTAAGAACCCCAACTACCAGGGCAAGTGGAAGGCACCAAAGATTGACAAC CCAGATTTCAAGGATGATCCAGAACTTTATGTTTACCCAAACTTGAGATATGTTGGCATTGAATTGTGGCAGGTGAAATCTGGAACCTTGTTTGATAATG TCTTGGTCAGTGATGACCCTGAGTATGCAAAGCAGCTGGCTGAAGAAACATGGGGAAAGCAGAAAGATGCTGAGAAGGCAGCATTTGAAGAGGCAGAGAA GAAGAAAGCGGATGAGGAGGAAACCAATGAAGATGCCGCAGGTTCTGATGCCGAGGATGAGGATGAGACTGATGATGTGGAAGGAGAAGATTCCGATGCC GAAACTAAAGAAGACAAGGACGGCGAGGACGAAGAAGAAGTACATGATGAGCTGTGA
AA sequence Show only first row Show all	>Potri.005G015100.2 pacid=42803148 polypeptide=Potri.005G015100.2.p locus=Potri.005G015100 ID=Potri.005G015100.2.v4.1 annot-version=v4.1 MGNPKTLSLSLILFSLFAITSAKVFFEERFEDGWENRWVVSDWKKDENTAGVWNHTSGKWNGDANDKGIQTSEDYRFYAISAEFPEFSNKDQTLVFQFSV KHEQKLDCGGGYLKLLSGEVDQKKFGGDTPYSIMFGPDICGHSTKKVHAILNYNETNQLIKKEVPCETDQLSHVYTFIIRPDATYSILIDNVEKQTGSLY TDWDLLPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKELPDPDAKKPEDWDDEEDGEWTAPTIPNPEYNGPWKPKKIKNPNYQGKWKAPKIDN PDFKDDPELYVYPNLRYVGIELWQVKSGTLFDNVLVSDDPEYAKQLAEETWGKQKDAEKAAFEEAEKKKADEEETNEDAAGSDAEDEDETDDVEGEDSDA ETKEDKDGEDEEEVHDEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56340		AtCRT1a, CRT1	calreticulin 1a (.1.2)		Potri.005G015100 [exp]	0	1
AT5G14030			translocon-associated protein ...		Potri.017G061900 [exp]	1.41	0.9433
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.014G160000 [exp]	2.64	0.9278
AT2G39960			Microsomal signal peptidase 25...		Potri.010G192700 [exp]	3.46	0.9337
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Potri.019G084900 [exp]	4.89	0.9287
AT5G14030			translocon-associated protein ...		Potri.001G323400 [exp]	5.19	0.9427
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.011G064400 [exp]	9.94	0.9218
AT3G52730			ubiquinol-cytochrome C reducta...		Potri.004G188700 [exp]	10.95	0.9022
AT2G16595			Translocon-associated protein ...		Potri.004G168500 [exp]	12.04	0.9324
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.007G031000 [exp]	12.84	0.9133
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.002G082100 [exp]	13.52	0.8863	Pt-PDI.4

Compare expression of checked genes

Potri.005G015100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.