Plant FIBer expression Database

Potri.005G017400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G56423 296 / 2e-101 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G008700
[exp]
380 / 6e-135 AT1G56423 283 / 1e-96 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010918
[exp]
298 / 4e-103 AT1G56423 286 / 2e-98 unknown protein
Lus10031415
[exp]
297 / 1e-102 AT1G56423 288 / 7e-99 unknown protein
Lus10029844
[exp]
295 / 5e-101 AT1G56423 310 / 9e-107 unknown protein
Lus10020695
[exp]
292 / 1e-99 AT1G56423 306 / 3e-105 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G017400.1 pacid=42804270 polypeptide=Potri.005G017400.1.p locus=Potri.005G017400 ID=Potri.005G017400.1.v4.1 annot-version=v4.1
ATGGATTTCCAAAAGAGGAGGGTTCTGTTTCTTGTCTTTATAGTTGGAACCATTGCTCTTAGCATCACAGCTGAAAAATGTAGGCAACTGGTTGGGGATG
ATTATTCATCCCAGAGTGGGAAGTTTACAATCTTTAACTGCTTTGACATGGGATCTGGAACCCTAGCATGTGCGGTGAAAGAAGGTGTAAAACTTTATTT
CTACAATATCAGATCTTCTCACGTTGAGAGAGCGAGAAATCTTGCAATTGAGCGTTCATTACTTGATACAATAGGACAGGGAATGCCTGCACAAGATGTG
GCAAAAACAGCACAGAAAGAAGGGGCAAAGGCAGCGAAGCTGGCGAAGCGGCAAACAAAACGCATCATTGGTCCTGTTATTTCTTCTGGATGGGACTTTT
TCGAAGCTCTTTATTATGGTGGTACAGTGACAGAAGGTTTCCTCAGGGGCAGTGGAACCTTGGCTGGTGCCTACGCTGGAGGTTTTTTTGGTGAGGAAAG
GCTTGGACGTGTTGGTTATCTTGTTGGCAGTCACCTTGGCAGTTGGGTTGGAGGTAGGATAGGACTAATGGTTTACGATGTGGTTAATGGAGTTCATTAC
TTGCTTCAGTTTGTTCAAGGAGAAGATGGTGAAGTTCATGAAACTCCAACTTATGAGAATTTTGAAGTTTCGGAGGACTCTCAAGGATACACAAGTTACA
AGGCTTCCGAGGATTCTAATGTGCATGAATCTCCTCCTGAAGAAAGTTCCGAATCATTTGAACATTCTGAGTTCAGGTGA
AA sequence
>Potri.005G017400.1 pacid=42804270 polypeptide=Potri.005G017400.1.p locus=Potri.005G017400 ID=Potri.005G017400.1.v4.1 annot-version=v4.1
MDFQKRRVLFLVFIVGTIALSITAEKCRQLVGDDYSSQSGKFTIFNCFDMGSGTLACAVKEGVKLYFYNIRSSHVERARNLAIERSLLDTIGQGMPAQDV
AKTAQKEGAKAAKLAKRQTKRIIGPVISSGWDFFEALYYGGTVTEGFLRGSGTLAGAYAGGFFGEERLGRVGYLVGSHLGSWVGGRIGLMVYDVVNGVHY
LLQFVQGEDGEVHETPTYENFEVSEDSQGYTSYKASEDSNVHESPPEESSESFEHSEFR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G56423 unknown protein Potri.005G017400
[exp]
0 1
AT3G54840 ARA6, AtRABF1, ... Ras-related small GTP-binding ... Potri.008G035800
[exp]
3.16 0.8317 Pt-ARA6.2
AT1G01230 ORMDL family protein (.1) Potri.002G174400
[exp]
4.00 0.8805
AT5G42190 SKP1B, ASK2 Arabidopsis SKP-like 2, E3 ubi... Potri.002G018700
[exp]
4.69 0.8283 Pt-SKP1.2
AT5G42970 FUS4, EMB134, C... FUSCA 8, FUSCA 4, EMBRYO DEFEC... Potri.014G180800
[exp]
7.21 0.7942
Potri.008G113500
[exp]
7.74 0.8745
AT5G18580 FASS2, TON2, GD... GORDO, FASS 1, EMBRYO DEFECTIV... Potri.008G215300
[exp]
11.48 0.7884
AT1G76200 unknown protein Potri.002G012700
[exp]
11.83 0.8437
AT2G37770 ChlAKR, AKR4C9 Chloroplastic aldo-keto reduct... Potri.008G144600
[exp]
11.83 0.7928
AT3G61200 Thioesterase superfamily prote... Potri.002G155500
[exp]
12.00 0.8090
AT1G68000 ATPIS1 phosphatidylinositol synthase ... Potri.009G135500
[exp]
12.48 0.8242

Potri.005G017400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.