Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-VP2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15690 1248 / 0 FUGU5, AtVHP1;1, AVP-3, ATAVP3, AVP1 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) AT1G16780 439 / 3e-142 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase family protein (.1) AT1G78920 434 / 7e-141 AtVHP2;1, AVPL1, AVP2 vacuolar H+-pyrophosphatase 2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, vacuolar H+-pyrophosphatase 2, vacuolar H+-pyrophosphatase 2 (.1), vacuolar H+-pyrophosphatase 2 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009400 [exp] 1408 / 0 AT1G15690 1237 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.006G063000 [exp] 1255 / 0 AT1G15690 1336 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.018G119500 [exp] 1254 / 0 AT1G15690 1367 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.010G254200 [exp] 446 / 2e-145 AT1G16780 1266 / 0.0 Inorganic H pyrophosphatase family protein (.1) Potri.008G003502 [exp] 139 / 1e-36 AT1G16780 477 / 3e-164 Inorganic H pyrophosphatase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038111 [exp] 1255 / 0 AT1G15690 1385 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10039977 [exp] 1245 / 0 AT1G15690 1381 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10038114 [exp] 1093 / 0 AT1G15690 1170 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008828 [exp] 638 / 0 AT1G15690 697 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008044 [exp] 545 / 0 AT1G15690 561 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10034800 [exp] 446 / 2e-145 AT1G16780 1434 / 0.0 Inorganic H pyrophosphatase family protein (.1) Lus10008042 [exp] 414 / 2e-131 AT1G15690 422 / 1e-134 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10033345 [exp] 348 / 9e-108 AT1G16780 1174 / 0.0 Inorganic H pyrophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03030 [poplar] [flax] H_PPase Inorganic H+ pyrophosphatase
Representative CDS sequence Show only first row Show all	>Potri.005G018700.1 pacid=42802940 polypeptide=Potri.005G018700.1.p locus=Potri.005G018700 ID=Potri.005G018700.1.v4.1 annot-version=v4.1 ATGCTAGTGAGCCATCTGGAAATGGGGATGTTGAGTGAAGGTCTTACGCAGGTTTTGATACCTGTTGCTGCTTTGATTGGGATTATTTTTGCTTTGCTTC AGTGGTATTTGGTGTCTAAGGTGAAGGTTTCTGGCGATTCTAGTAACGGTTTAAGTGATAAGTTGATTGAAGATGAAGAAGATGGTGTTGATAATCGTGA GGCTTCTATCAAGTGTGCTGAAATCCAGAATGCTATTTCTGTCGGGGCAACGTCATTCCTGTTTACTCAGTACAAGTACCTCAGTGTCTTCATGTGTGTT TTTGCTGCCATTATTTTCCTCTTCCTTGGTTCAGTTAAGGGATTCAGCACCAAAAGCGAACCTTGCACATACAACAAAGGGAGTCTTTGTAAACCAGCTC TTGCCAATGCTGCCTTTAGCACAGTTGCTTTCTTGCTTGGTGCTCTTACTTCTGTCCTCTCAGGATTCCTAGGCATGAAGATTGCAACCTATGCCAATGC CAGGACAACTCTAGAAGCAAGGAAGGGTGTAGGAAAGGCCTTTGTCACAGCTTTTCGTTCGGGGGCGGTGATGGGTTTCCTTCTTGCTGCGAATGGTCTT TTGGTGCTCTATATCTCCATCCTCTTATTCAAACTCTACTATGGAGATGACTGGGAAGGACTTTATGAGTCCATTACTGGTTATGGCCTTGGAGGTTCAT CAATGGCACTGTTTGGAAGAGTTGGAGGAGGAATATATACAAAAGCAGCTGATGTTGGTGCTGACCTTGTTGGAAAAGTTGAACTAAACATCCCTGAAGA TGATCCAAGAAATCCAGCTGTTATTGCCGATAATGTGGGTGACAATGTAGGAGACATTGCAGGGATGGGGTCTGACCTGTTTGGATCTTATGCTGAATCA TCCTGTGCAGCACTTTTTGTTGCATCTATATCATCCTTTGGTATTAACCATGACCACACAGCCATGTCTTTTCCACTGATTATAAGCTCAGTTGGGATTG TAGTTTGCCTGATAACTACACTTTTTGCAACCGATCTCTTCAAGATCAAGGATGTAAGTGAAATCGAGCCATCACTGAAGAGGCAACTCGTTGTCTCGAC AATTCTCATGACTGTTGGGATTGCCATGGTCAGCTTCTTTGCTTTGCCATCAGAATTCACTATCTTCAATTTCGGAACTGAGAAGGTTGTCAAGAACTGG CACCTTTTCTTTTGTGTTGCCATTGGCTTGTGGGCTGGACTTGTGATTGGATATACAACAGAGTATTACACTAGCAATGCTTACAGTCCAGTGCAGGATG TAGCAGATTCTTGCAGGACAGGTGCTGCGACGAATGTCATTTTTGGGTTGGCTTTGGGCTACAAATCTGTCATCATTCCAATATTTTCCATTGCCATTGC TATTTTTGTCAGCTTTAGCCTGGCTGCCATGTATGGAATTGCTGTGGCTGCGTTGGGGATGCTCAGTACTATTGCTACCGGTCTTGCTATCGATGCTTAT GGGCCCATAAGTGATAATGCTGGTGGCATTGCAGAAATGGCTGGTATGAGTCATAAGATACGTGAAAGAACAGATGCTCTAGATGCTGCTGGCAACACCA CTGCTGCAATTGGCAAGGGTTTTGCCATTGGATCAGCTGCTCTCGTTTCCCTTGCTTTGTTTGGTGCCTTTGTCAGCAGGGCTGGGATCAATACTGTCGA TGTCTTGACCCCTAAGGTCTTCATTGGGCTGATTGTTGGGGCAATGCTCCCATACTGGTTCTCCGCCATGACAATGAAGAGTGTAGGAAGTGCAGCACTC AAAATGGTCGAAGAGGTTCGTCGACAATTCAAAACTATTCCAGGACTTATGGAAGGTAGAGCCAAACCAGACTACGCAAACTGTGTCAAAATTTCAACTG ATGCCTCCCTCAGGGAGATGATCCCACCTGGTGCCTTAGTCATGCTTACACCACTTATCACCGGAACCTTATTCGGAGTCGAAACTCTTGCTGGTGTTCT TGCTGGTTCACTTGTTTCTGGTGTTCAGGTTGCCATTTCAGCTTCGAATACTGGAGGGGCATGGGATAATGCCAAGAAATACATAGAGGCTGGTGTATCA GAGCATGCGAAATCGTTAGGTCCAAAGGGTTCAGATGCACACAAAGCTGCTGTCATTGGTGACACAATTGGAGATCCCCTCAAGGACACTTCAGGTCCAT CACTTAACATCCTGATAAAGCTTATGGCAGTTGAGTCACTGGTGTTTGCTCCATTCTTCGCGGCTCATGGAGGTTTGCTGTTCAAATATCTCTAA
AA sequence Show only first row Show all	>Potri.005G018700.1 pacid=42802940 polypeptide=Potri.005G018700.1.p locus=Potri.005G018700 ID=Potri.005G018700.1.v4.1 annot-version=v4.1 MLVSHLEMGMLSEGLTQVLIPVAALIGIIFALLQWYLVSKVKVSGDSSNGLSDKLIEDEEDGVDNREASIKCAEIQNAISVGATSFLFTQYKYLSVFMCV FAAIIFLFLGSVKGFSTKSEPCTYNKGSLCKPALANAAFSTVAFLLGALTSVLSGFLGMKIATYANARTTLEARKGVGKAFVTAFRSGAVMGFLLAANGL LVLYISILLFKLYYGDDWEGLYESITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGKVELNIPEDDPRNPAVIADNVGDNVGDIAGMGSDLFGSYAES SCAALFVASISSFGINHDHTAMSFPLIISSVGIVVCLITTLFATDLFKIKDVSEIEPSLKRQLVVSTILMTVGIAMVSFFALPSEFTIFNFGTEKVVKNW HLFFCVAIGLWAGLVIGYTTEYYTSNAYSPVQDVADSCRTGAATNVIFGLALGYKSVIIPIFSIAIAIFVSFSLAAMYGIAVAALGMLSTIATGLAIDAY GPISDNAGGIAEMAGMSHKIRERTDALDAAGNTTAAIGKGFAIGSAALVSLALFGAFVSRAGINTVDVLTPKVFIGLIVGAMLPYWFSAMTMKSVGSAAL KMVEEVRRQFKTIPGLMEGRAKPDYANCVKISTDASLREMIPPGALVMLTPLITGTLFGVETLAGVLAGSLVSGVQVAISASNTGGAWDNAKKYIEAGVS EHAKSLGPKGSDAHKAAVIGDTIGDPLKDTSGPSLNILIKLMAVESLVFAPFFAAHGGLLFKYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.005G018700 [exp]	0	1	Pt-VP2.1
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Potri.002G202300 [exp]	3.87	0.8149	SUS2.2
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048900 [exp]	8.48	0.8223
AT5G36930			Disease resistance protein (TI...		Potri.001G066500 [exp]	11.74	0.8235
AT1G06290		ATACX3, ACX3	acyl-CoA oxidase 3 (.1)		Potri.013G123500 [exp]	12.48	0.7858
AT2G45510		CYP704A2	"cytochrome P450, family 704, ...		Potri.014G072300 [exp]	18.52	0.8089
AT4G27300			S-locus lectin protein kinase ...		Potri.011G125201 [exp]	18.97	0.7925
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125301 [exp]	19.49	0.7912
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Potri.017G048700 [exp]	21.90	0.7938
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.003G043500 [exp]	23.62	0.7398
AT1G72040			P-loop containing nucleoside t...		Potri.019G081600 [exp]	24.37	0.8131

Compare expression of checked genes

Potri.005G018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.