Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02080 357 / 1e-127 ASAR1, ATSARA1C, ATSAR2 secretion-associated RAS super family 2 (.1) AT3G62560 352 / 6e-126 Ras-related small GTP-binding family protein (.1) AT1G56330 348 / 2e-124 ATSAR1B, ATSAR1, SAR1, ATSARA1B ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS 1B, secretion-associated RAS 1B (.1) AT1G09180 332 / 7e-118 ATSARA1A, ATSAR1 SECRETION-ASSOCIATED RAS 1, secretion-associated RAS super family 1 (.1) AT1G02620 181 / 4e-59 Ras-related small GTP-binding family protein (.1) AT2G24765 93 / 1e-23 ARF3, ARL1, ATARL1 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) AT3G49870 87 / 2e-21 ATARLA1C ADP-ribosylation factor-like A1C (.1) AT2G47170 86 / 4e-21 ARF1A1C, ARF1 Ras-related small GTP-binding family protein (.1) AT3G62290 86 / 4e-21 ATARFA1E ADP-ribosylation factor A1E (.1.2.3) AT1G23490 85 / 1e-20 ATARFA1A, ATARF1, ATARF ADP-RIBOSYLATION FACTOR 1A, ADP-ribosylation factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010000 [exp] 359 / 1e-128 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.010G141900 [exp] 357 / 1e-127 AT4G02080 384 / 3e-138 secretion-associated RAS super family 2 (.1) Potri.013G009900 [exp] 355 / 4e-127 AT4G02080 308 / 3e-108 secretion-associated RAS super family 2 (.1) Potri.008G107800 [exp] 355 / 5e-127 AT4G02080 338 / 4e-120 secretion-associated RAS super family 2 (.1) Potri.005G015400 [exp] 345 / 6e-123 AT4G02080 299 / 7e-105 secretion-associated RAS super family 2 (.1) Potri.006G171500 [exp] 92 / 2e-23 AT2G24765 353 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G013700 [exp] 91 / 3e-23 AT2G24765 336 / 6e-120 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.006G267800 [exp] 91 / 3e-23 AT2G24765 333 / 8e-119 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2) Potri.018G096077 [exp] 91 / 4e-23 AT2G24765 354 / 8e-127 ARF-LIKE 1, ADP-ribosylation factor 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010926 [exp] 356 / 4e-127 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10031408 [exp] 356 / 4e-127 AT4G02080 385 / 9e-139 secretion-associated RAS super family 2 (.1) Lus10037739 [exp] 355 / 4e-127 AT4G02080 389 / 2e-140 secretion-associated RAS super family 2 (.1) Lus10036456 [exp] 351 / 2e-125 AT4G02080 386 / 3e-139 secretion-associated RAS super family 2 (.1) Lus10016874 [exp] 349 / 2e-124 AT4G02080 383 / 7e-138 secretion-associated RAS super family 2 (.1) Lus10041127 [exp] 335 / 2e-118 AT4G02080 369 / 1e-131 secretion-associated RAS super family 2 (.1) Lus10031436 [exp] 86 / 7e-21 AT5G14670 368 / 2e-132 ADP-ribosylation factor A1B (.1) Lus10002817 [exp] 85 / 1e-20 AT2G15310 273 / 1e-94 ADP-ribosylation factor B1A (.1) Lus10030884 [exp] 85 / 2e-20 AT5G14670 371 / 4e-133 ADP-ribosylation factor A1B (.1) Lus10001524 [exp] 85 / 3e-20 AT1G10630 372 / 3e-133 ADP-ribosylation factor A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF08477 [poplar] [flax] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Potri.005G019100.1 pacid=42805140 polypeptide=Potri.005G019100.1.p locus=Potri.005G019100 ID=Potri.005G019100.1.v4.1 annot-version=v4.1 ATGTTTTTGGTTGATTGGTTTTATGGGGTGCTAGCATCACTTGGTTTATGGCAAAAAGAAGCCAAGATCCTGTTTTTAGGTCTTGATAATGCTGGCAAAA CCACTTTGCTTCACATGTTAAAGGACGAGAGATTGGTGCAACATCAGCCAACACAGTATCCAACATCTGAGGAATTGAGCATTGGCAAAATCAAGTTTAA GGCTTTTGATTTGGGTGGACATCAGATTGCTCGTCGAGTTTGGAAAGATTACTATGCCAAGGTGGATGCTGTTATTTACCTGGTAGATGCCTATGACAAA GAGAGATTCGCGGAGGCCAAGAAAGAATTGGATGCTCTCCTCTCTGATGAAGCATTAGCCAATGTCCCCTTTCTTGTTTTGGGCAACAAGATTGATATCC CTTATGCTGCCTCGGAAGATGAGTTGCGTTACAACCTGGGTCTCACCAACTTCACCACTGGCAAGGGTAAGGTGAACTTGGTCGACTCAAATGTCCGTCC CCTTGAGGTATTCATGTGTAGCATTGTCCGCAAAATGGGCTATGGAGAGGGTTTTAGGTGGCTTTCTCAGTATATCAAGTAG
AA sequence Show only first row Show all	>Potri.005G019100.1 pacid=42805140 polypeptide=Potri.005G019100.1.p locus=Potri.005G019100 ID=Potri.005G019100.1.v4.1 annot-version=v4.1 MFLVDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVIYLVDAYDK ERFAEAKKELDALLSDEALANVPFLVLGNKIDIPYAASEDELRYNLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFRWLSQYIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.005G019100 [exp]	0	1
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.013G010000 [exp]	2.00	0.8530
AT4G28088			Low temperature and salt respo...		Potri.018G105100 [exp]	6.70	0.8005
AT1G21760		ATFBP7	F-box protein 7 (.1)		Potri.005G178600 [exp]	7.34	0.7412
AT4G22310			Uncharacterised protein family...		Potri.011G023100 [exp]	9.59	0.7903
AT1G61780			postsynaptic protein-related (...		Potri.004G021200 [exp]	10.19	0.7667
AT3G11750		FOLB1	Dihydroneopterin aldolase (.1)		Potri.016G067200 [exp]	11.22	0.7739
AT4G37608			unknown protein		Potri.009G004400 [exp]	16.43	0.7837
AT5G37680		ATARLA1A	ADP-ribosylation factor-like A...		Potri.017G130500 [exp]	17.17	0.6918
AT3G51610		NPU	NO PRIMEXINE AND PLASMA MEMBRA...		Potri.016G134700 [exp]	20.00	0.7605
AT5G46150			LEM3 (ligand-effect modulator ...		Potri.011G082100 [exp]	21.63	0.7651

Compare expression of checked genes

Potri.005G019100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.