Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56320 130 / 5e-39 unknown protein AT5G49350 124 / 6e-36 Glycine-rich protein family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G108400 [exp] 130 / 1e-38 AT5G49350 138 / 9e-41 Glycine-rich protein family (.1.2) Potri.013G158300 [exp] 45 / 3e-06 AT5G49350 44 / 1e-05 Glycine-rich protein family (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016857 [exp] 115 / 5e-32 AT5G49350 138 / 3e-40 Glycine-rich protein family (.1.2) Lus10037727 [exp] 114 / 4e-31 AT5G49350 136 / 1e-38 Glycine-rich protein family (.1.2) Lus10031407 [exp] 102 / 2e-27 ND 85 / 1e-20 Lus10010927 [exp] 95 / 4e-23 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041125 [exp] 82 / 1e-19 AT5G49350 99 / 2e-25 Glycine-rich protein family (.1.2) Lus10034447 [exp] 41 / 6e-05 AT5G49350 41 / 9e-05 Glycine-rich protein family (.1.2) Lus10019112 [exp] 40 / 0.0002 ND 40 / 2e-04
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G019200.1 pacid=42804458 polypeptide=Potri.005G019200.1.p locus=Potri.005G019200 ID=Potri.005G019200.1.v4.1 annot-version=v4.1 ATGGCAATCTTAGCTTTGCCAAAACTAAAATTCCTTGCCTTCATGACTCTAATTTTCATGGCCAGATTGTGCTGCTACACAGGATATGCTCAGGTTGTCC CCGGACAGATGGTTGCTAAAGCATTGTTGTGTTTGAATAACAAGATTATTTATTCAGGATGTGACGAGGCATATAGATTAACACAGAGTGGGAATCTTAA TGTACCTCCTGAAGCAACTGAACTATTCTGTAATGGACCTTGCTTAGCTGAGACAAGATTAGCGCTGAGTTGCATTAATGATGTGATATCAGATTTTCTT TTCTATAATAAGGCTACTGTAAGAGACATAAATTATGCGCTGAGTGCTGGTTGCAGCTCCACTAGGCAAAGAGGTGACTTCAATGTGGCAAGGTACATCA ATGGTGAAACAAGTAGTGCATCAAGCTTGCCCAACTTGATTGGATTCTATGCCTTGGCTTTGTTTATTTGGTGGTGGATATTGCTCTTGTAA
AA sequence Show only first row Show all	>Potri.005G019200.1 pacid=42804458 polypeptide=Potri.005G019200.1.p locus=Potri.005G019200 ID=Potri.005G019200.1.v4.1 annot-version=v4.1 MAILALPKLKFLAFMTLIFMARLCCYTGYAQVVPGQMVAKALLCLNNKIIYSGCDEAYRLTQSGNLNVPPEATELFCNGPCLAETRLALSCINDVISDFL FYNKATVRDINYALSAGCSSTRQRGDFNVARYINGETSSASSLPNLIGFYALALFIWWWILLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56320			unknown protein		Potri.005G019200 [exp]	0	1
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Potri.018G067000 [exp]	2.82	0.9283	Pt-ACS3.2
AT4G04745			unknown protein		Potri.011G002100 [exp]	4.58	0.9026
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Potri.008G139100 [exp]	4.89	0.9113	Pt-PAP8.3
AT3G46540			ENTH/VHS family protein (.1)		Potri.008G055600 [exp]	4.89	0.9252
AT3G09390		ATMT-K, ATMT-1,...	ARABIDOPSIS THALIANA METALLOTH...		Potri.013G131200 [exp]	5.83	0.9256
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Potri.009G076900 [exp]	9.16	0.9073
AT4G17340		TIP2;2, DELTA-T...	tonoplast intrinsic protein 2;...		Potri.003G077800 [exp]	12.36	0.8961	Pt-TIP2.5
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.014G136200 [exp]	12.36	0.8871	Pt-HPT2.1
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212000 [exp]	15.90	0.8915
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120300 [exp]	16.88	0.9110

Compare expression of checked genes

Potri.005G019200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.