Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09190 575 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 363 / 1e-120 MEF21 mitochondrial editing factor 21 (.1) AT5G08510 331 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 326 / 3e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 326 / 6e-104 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 315 / 5e-101 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 315 / 1e-100 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49142 312 / 4e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44230 310 / 2e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 308 / 4e-98 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035900 [exp] 362 / 9e-120 AT2G20540 709 / 0.0 mitochondrial editing factor 21 (.1) Potri.002G175900 [exp] 350 / 1e-115 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 347 / 8e-114 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.003G223900 [exp] 342 / 3e-112 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G239600 [exp] 343 / 1e-111 AT5G59200 694 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 80, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G086200 [exp] 338 / 1e-108 AT4G14820 840 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 329 / 2e-106 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 328 / 5e-106 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 328 / 1e-104 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029853 [exp] 662 / 0 AT1G09190 575 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10020918 [exp] 333 / 8e-108 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 328 / 2e-107 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030125 [exp] 325 / 2e-106 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10029344 [exp] 317 / 3e-101 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024971 [exp] 310 / 8e-99 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010385 [exp] 308 / 4e-98 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010901 [exp] 301 / 7e-98 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 305 / 1e-96 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004052 [exp] 299 / 9e-95 AT1G31430 684 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G019400.1 pacid=42803698 polypeptide=Potri.005G019400.1.p locus=Potri.005G019400 ID=Potri.005G019400.1.v4.1 annot-version=v4.1 ATGAGCAGAGCTTGCAGGGAGATTGAGCGCAACATCTTGCGCCTTCTCCACGGGCGCGAAACCCGAACACAGCTCCGTGAGATACACGCACATTTCCTTC GACATGGTCTCAACCAACTCAACCAAATCCTTTCCCATTTCGTCTCCATTTGCGGGTCACTAAACAAAATGGCCTATGCGAATCGGATTTTTAAGCAAAC CCAGAACCCCACTATAATCCTATTCAATGCAATGATTAAAGGGTATTCTTTAAATGGACCGTTTGAAGAGTCTTTCCGTTTGTTTTCTTCAATGAAAAAT CGAGGTATTTGGCCGGATGAGTACACGCTTGCGCCTTTGCTTAAGGCGTGTTCAAGTCTTGGTGTGCTTCAACTTGGGAAATGTATGCACAAGGAGGTTC TTGTTGTTGGGTTCGAGGGTTTTAGCGCAATAAGAATTGGGGTTATAGAGTTGTATAGTTCTTGTGGGGTAATGGAAGATGCTGAGAAAGTGTTTGATGA AATGTATCAAAGAGATGTGATTGTTTGGAATTTGATGATTCATGGGTTTTGTAAGAGAGGGGATGTTGATATGGGGTTGTGTTTGTTTAGACAGATGAGA AAGCGGAGTGTTGTTTCGTGGAATATCATGATTTCTTGCCTAGCACAAAGTCGGCGGGATAGTGAAGCTTTAGGACTTTTTCATGATATGCTGGATTGGG GATTTAAGCCTGATGAGGCAACCGTAGTTACTGTTCTGCCTATTTGTGCTCGTTTGGGTTCTGTTGATGTTGGGAAATGGATTCATTCTTATGCAAAATC AAGTGGGCTTTATCGAGATTTTGTAGCTGTGGGCAATGCACTAGTGGATTTTTACAATAAATCCGGCATGTTTGAGACTGCTAGAAGGGTATTTGATGAG ATGCCTCGAAAGAACGTGATTTCTTGGAACACATTAATTTCGGGTTTGGCTTTAAATGGAAATGGTGAACTTGGGGTTGAATTGTTGGAGGAGATGATGA ACGAAGGGGTAAGACCCAATGATGCGACATTTGTTGGGGTTTTATCGTGTTGTGCTCATGCAGGACTGTTTGAAAGAGGGAGGGAATTGCTTGCTTCAAT GGTGGAGCATCATCAAATCGAGCCTAAACTTGAGCACTATGGATGCATGGTTGATCTCCTAGGGCGTAGTGGATGTGTGAGGGAGGCTTATGACCTGATT AGAATCATGCCTGGGGGAGCTCCAAATGCTGCTCTATGGGGTTCCTTGCTTAGTGCTTGCCGTACTCATGGTGATGTAGAGCTTGCACACCTTGCAGTAA AAGAGCTTATTGATCTTGAACCATGGAATTCTGGCAACTATGTGTTGTTGTCGAATATGTATGCAGAGGAAGAGAGATGGGACAAAGTTGCAAATGTACG AGGGATGATGAGGGAGAAGAATGTCAAGAAGACACCAGGGCAGAGTGTTATTGGATAA
AA sequence Show only first row Show all	>Potri.005G019400.1 pacid=42803698 polypeptide=Potri.005G019400.1.p locus=Potri.005G019400 ID=Potri.005G019400.1.v4.1 annot-version=v4.1 MSRACREIERNILRLLHGRETRTQLREIHAHFLRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQNPTIILFNAMIKGYSLNGPFEESFRLFSSMKN RGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEVLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQMR KRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTVLPICARLGSVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDE MPRKNVISWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLEHYGCMVDLLGRSGCVREAYDLI RIMPGGAPNAALWGSLLSACRTHGDVELAHLAVKELIDLEPWNSGNYVLLSNMYAEEERWDKVANVRGMMREKNVKKTPGQSVIG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09190			Tetratricopeptide repeat (TPR)...		Potri.005G019400 [exp]	0	1
AT3G15930			Pentatricopeptide repeat (PPR)...		Potri.001G464200 [exp]	1.73	0.9155
AT3G29230			Tetratricopeptide repeat (TPR)...		Potri.004G125500 [exp]	3.46	0.9034
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.017G141200 [exp]	4.24	0.8748
AT3G55140			Pectin lyase-like superfamily ...		Potri.006G214400 [exp]	7.93	0.7697
AT1G11290		CRR22	CHLORORESPIRATORY REDUCTION22,...		Potri.002G220300 [exp]	8.36	0.8396
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G030000 [exp]	8.48	0.8600
AT3G26782			Tetratricopeptide repeat (TPR)...		Potri.001G322100 [exp]	14.49	0.8452
AT2G44850			unknown protein		Potri.002G137300 [exp]	20.44	0.7942
AT3G52905			Polynucleotidyl transferase, r...		Potri.001G104800 [exp]	22.24	0.7868
AT5G64650			Ribosomal protein L17 family p...		Potri.007G107100 [exp]	24.18	0.7894

Compare expression of checked genes

Potri.005G019400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.