Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62630 218 / 4e-67 Protein of unknown function (DUF1645) (.1) AT2G15760 61 / 4e-10 Protein of unknown function (DUF1645) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010400 [exp] 533 / 0 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1) Potri.004G143500 [exp] 69 / 2e-12 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.014G034900 [exp] 69 / 2e-12 AT2G26530 174 / 1e-51 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Potri.009G105400 [exp] 66 / 2e-11 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.002G128500 [exp] 62 / 2e-10 AT2G26530 191 / 4e-58 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020690 [exp] 315 / 1e-104 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1) Lus10029855 [exp] 289 / 2e-94 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1) Lus10014025 [exp] 75 / 2e-14 AT2G15760 203 / 8e-63 Protein of unknown function (DUF1645) (.1) Lus10019892 [exp] 74 / 2e-14 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10040164 [exp] 64 / 4e-12 ND / Lus10012069 [exp] 67 / 6e-12 AT2G15760 171 / 4e-51 Protein of unknown function (DUF1645) (.1) Lus10027912 [exp] 62 / 3e-10 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1) Lus10032766 [exp] 59 / 3e-09 AT2G26530 193 / 4e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10021757 [exp] 57 / 2e-08 AT2G26530 194 / 2e-59 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2) Lus10006479 [exp] 54 / 1e-07 AT2G26530 133 / 4e-37 Protein of unknown function (DUF1645) (.1), Protein of unknown function (DUF1645) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [poplar] [flax] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Potri.005G019600.1 pacid=42803400 polypeptide=Potri.005G019600.1.p locus=Potri.005G019600 ID=Potri.005G019600.1.v4.1 annot-version=v4.1 ATGGAGCTGCAAGAAACCCAGAGTAAGAACAAAAATGGCCAAACCTCTACACCAGACCCAAAAACAGACCTTGGAAACCCTTACAATGGCAAAACTTTAG AAACCCATTACTTTACTGAAGACTTTGACAGTGCTTGTTCCACACCTTATGTTAGCGCGCCTTCTAGCCCGGGTCGACCCGGATCGGGACCCGTTAACGG CGGGTTCTTTTATAGTTGTCCGGCAAGTCCAAGGCATTTCGCAATGACATCAGCGGAAAAGGCAATGGCGAATTTTGCTTCTTCGCCTGATAATAGTGTC GCTATTGGTTATGAGTTTGAATTCTCTGCACGGTTTGGCTCGACCGGGTCGGGTCAACCCGGATCCATGAGTTCAGCTGATGAGCTTTTCCTGAATGGTC AGATCCGCCCCATGAAGTTGTCTTCTCATTTGCAGAGACCCCAGGTGTTAGCTCCTTTGATGGATCTTGAAAATGAAGAGGAAGATGGAGATAGTAGTAA TGAAGATGAATTCATGAAGGGTTGGAGAAAGGTTGGTGCTCATGGTGAAAGTATGTCGAGAGGAAGAGATCTGAGGTTAAAGAACAAATCTTTACGTAGA AGAACAAGATCCATGTCACCATTGAGAAGCACTTCTTTTGAGTTTGAAGATTATGGTGAAGAAAACAAGAACGTAATTGATGGGTCTATTACTTCTTTGG AAGTTAATGATGAAAGTCTCAAGCTTGATGAGGCTACAACTAGTGGTGGCACTGATACTCCTCCAGCTTCTGCATCATCTTCAAGGTCATCATCAGCTGG AAGGAACTCAAAAAAATGGGTTTTTTTGAAAGATCTTCTTTATAGAAGCAAGAGTGAAGGGAGGAGCAACAACAAGTTTTGGTCTAACTTTTCCTTCTCA CCGGTCAAGGAGAAGAGTAAGAAACAAAGTACTGGTGTCCAACTTGGTGTGTCAAAAGAGAAGGCTAGCAGCAGCAGCAGCACCAACAATAGTAGGTCTA ATGTTGGTAGTGAGAGTCAGAAAGTGAAGGGAAATAGTGGGCATGGCTCTTCTTCTTCTTCAGGGAAGAAGCCAATGAATGGAATAGGCAAGAGGAGAGT ACCAGCATCACCACATGAGTTACATTATAAGGCAAGTAAAGCACAAGCTGAGGAGATGAGAAAGAAGACATTTTTGCCTTACAGACAAGGTTTACTGGGG TGTTTAGGGTTCAGTTCAAAGGGTTATGGAGCTATGAATGGATTTGCTAGAGCTTTGAATCCTGTTTCATCCAGGTAA
AA sequence Show only first row Show all	>Potri.005G019600.1 pacid=42803400 polypeptide=Potri.005G019600.1.p locus=Potri.005G019600 ID=Potri.005G019600.1.v4.1 annot-version=v4.1 MELQETQSKNKNGQTSTPDPKTDLGNPYNGKTLETHYFTEDFDSACSTPYVSAPSSPGRPGSGPVNGGFFYSCPASPRHFAMTSAEKAMANFASSPDNSV AIGYEFEFSARFGSTGSGQPGSMSSADELFLNGQIRPMKLSSHLQRPQVLAPLMDLENEEEDGDSSNEDEFMKGWRKVGAHGESMSRGRDLRLKNKSLRR RTRSMSPLRSTSFEFEDYGEENKNVIDGSITSLEVNDESLKLDEATTSGGTDTPPASASSSRSSSAGRNSKKWVFLKDLLYRSKSEGRSNNKFWSNFSFS PVKEKSKKQSTGVQLGVSKEKASSSSSTNNSRSNVGSESQKVKGNSGHGSSSSSGKKPMNGIGKRRVPASPHELHYKASKAQAEEMRKKTFLPYRQGLLG CLGFSSKGYGAMNGFARALNPVSSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62630			Protein of unknown function (D...		Potri.005G019600 [exp]	0	1
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066500 [exp]	1.00	0.9288
AT5G14920			Gibberellin-regulated family p...		Potri.001G350600 [exp]	4.47	0.9070
AT1G65590		HEXO3, ATHEX1	beta-hexosaminidase 3 (.1)		Potri.008G079400 [exp]	5.00	0.8953
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Potri.012G022500 [exp]	6.16	0.9179
AT4G19980			unknown protein		Potri.003G110200 [exp]	7.93	0.8528
AT3G03680			C2 calcium/lipid-binding plant...		Potri.013G066400 [exp]	10.48	0.8519
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.017G081700 [exp]	11.09	0.9160
AT1G64690		BLT	BRANCHLESS TRICHOMES, branchle...		Potri.001G082600 [exp]	12.00	0.8742
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Potri.006G122900 [exp]	13.96	0.8599	Pt-XTH32.1
AT3G05470			Actin-binding FH2 (formin homo...		Potri.013G017900 [exp]	15.09	0.8321

Compare expression of checked genes

Potri.005G019600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.