Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05740 829 / 0 RECQI1 RECQ helicase l1 (.1) AT1G10930 408 / 5e-129 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G60930 405 / 3e-128 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G31360 339 / 2e-107 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT4G35740 335 / 1e-105 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G27880 202 / 3e-55 DEAD/DEAH box RNA helicase family protein (.1) AT5G27680 159 / 8e-41 RECQSIM RECQ helicase SIM (.1) AT3G06480 69 / 8e-12 DEAD box RNA helicase family protein (.1) AT2G33730 68 / 2e-11 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G01540 63 / 3e-10 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015800 [exp] 402 / 8e-127 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.003G104300 [exp] 340 / 7e-108 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.005G107400 [exp] 334 / 6e-105 AT4G35740 850 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Potri.013G161200 [exp] 271 / 3e-80 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G056500 [exp] 193 / 3e-52 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 164 / 2e-42 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.010G152400 [exp] 71 / 2e-12 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.001G347100 [exp] 66 / 8e-11 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.003G038300 [exp] 65 / 1e-10 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042451 [exp] 882 / 0 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10026219 [exp] 751 / 0 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10015467 [exp] 413 / 7e-130 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10033289 [exp] 328 / 2e-102 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034749 [exp] 302 / 3e-93 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10041840 [exp] 298 / 8e-91 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10028387 [exp] 244 / 9e-72 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10034434 [exp] 241 / 4e-69 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10004503 [exp] 170 / 3e-44 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10019129 [exp] 102 / 6e-24 AT5G27680 109 / 9e-27 RECQ helicase SIM (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] PF16124 [poplar] [flax] RecQ_Zn_bind RecQ zinc-binding
Representative CDS sequence Show only first row Show all	>Potri.005G019800.1 pacid=42805275 polypeptide=Potri.005G019800.1.p locus=Potri.005G019800 ID=Potri.005G019800.1.v4.1 annot-version=v4.1 ATGGGAGGTCGTGATTTGGAGTTGGAGAGAGCTCGATTTCTAAGCTTGGCTTTGGAGTTTGGTTTCGATGAAGAATCTGCAAACAAATGCCTAGACCGCT TGATTTCTCTCTATGGTGATGATGGCCAAGATTTTATCACAGTTGAGTGCTGTGGGGATGATTTTCTTGTGGCACTGGCTGAATCTATGCAAGACACTGA GGACTGGGGTGATGATGATTTACAAATTATTGAATCAGAAGCTTGTGGAACTTTAACTAACATGTTTGAGGAACATGTTGTAAAGAACAACAATAAAGCA AATGATGATGAGAACTCGAGAACCTACATAGATGTTACTGATGATTCACCTGAACCTAAAAAGACAAGGACTTTTATGGAATTGGATTCTTCGAGTGATA GTGAAGAAGAGCCAGATTTTAGTTTGGAAGAGGAAAATCATGATTTATTTACCCCCTTGACTAAACGAATTTCAGGATCTTTGGACTGTAAAAGCAGTGT TACTCAAGGTTCAGTTTCCTCAGTTGGCAATAAAAAGCAATGTCCCAGGATGTCAAAAGATGACCATCGGAGTCTCAATTATGAAGAATTACAGGCTTTG GATGACTTTGAACTAGCAAACGTTGTAATATTTGGCAACAAGACATTTCGTCCATTGCAGCATCAGGCTTGTAAAGCAACTGTGGCAAAGCAAGATTGTT TTGTTCTTATGCCTACCGGAGGCGGTAAAAGTCTATGTTACCAGCTTCCTGCAACTCTGAAACCTGGTGTTACAGTGGTCATATCTCCCTTGCTTTCCCT CATTCAGGATCAAATTATCACACTGAACCTCAAGTTTGGAATACCAGCAACTTTTTTGAACTCTCAACAAACTTCTGCCCAAGCAGCAGCTATCCTCCAA GAGCTAAGAAAGGACAAGCCATCATGTAAGCTCTTATATGTGACTCCTGAAAGGATTGCTGGGAACCCAGCATTTCTTGAAATACTGAAATGTCTGCATC TGAAGGGACAATTAGCAGGTTTTGTTGTTGATGAAGCACATTGCGTGAGCCAGTGGGGACATGATTTCCGTCCAGACTACAAGAGATTAGGATGTCTAAA GCAGAATTTTCCGGTTGTCCCTGTTATGGCGCTGACTGCCACAGCAACCCATTCAGTTCGTGAGGATATCTTAAAAACTTTAAGAATTCCAAGGGCTCTT GTCTTAGAGACAAGCTTCGATAGACCAAATTTGAAATATGAAGTGGTTGGGAAGACCAAAGAATCGCTGAAGCTGCTTGGAGATCTTCTAAGGGATCGTT TCAAGAATCAGTGTGGAATAGTATACTGCCTTTCAAAAAATGAATGTGTTGAGGTCTCGAAGTTTTTGAATGAGAAATGTAAGATTAAGGCAGTTTATTA TCATGCTGGTTTGGGAGCTCGCCAAAGAGTTGATGTTCAGAGGAAGTGGCACACAGGCGAAGTCCACATTGTATGTGCTACTATTGCGTTTGGAATGGGA ATAGATAAACCAGATGTTCGCTTTGTTATCCACAATACATTGTCTAAATCAATTGAAAGCTATTATCAAGAATCTGGAAGGGCTGGAAGAGACAGTCATC CTGCTACATGCATTGCTCTATATCAGAAGAAGGATTTCAGTCGGGTTGTATGTATGTTAAGGAGCGGACAGGGTTATAAAAGGGAAAGCTTTAAGCCAGC AATGGCTCAAGCTCAGAAGATGAAAAGCTATTGTGAGCTCAAGGTTGAATGTAGAAGACAAGTTTTACTTGAACACTTCGGAGAGTCTTTTGATCAAAAG GCCTGCAAATTTGGCTCTAATCCCTGTGATAACTGTCTCAAGACTACCTTGTGA
AA sequence Show only first row Show all	>Potri.005G019800.1 pacid=42805275 polypeptide=Potri.005G019800.1.p locus=Potri.005G019800 ID=Potri.005G019800.1.v4.1 annot-version=v4.1 MGGRDLELERARFLSLALEFGFDEESANKCLDRLISLYGDDGQDFITVECCGDDFLVALAESMQDTEDWGDDDLQIIESEACGTLTNMFEEHVVKNNNKA NDDENSRTYIDVTDDSPEPKKTRTFMELDSSSDSEEEPDFSLEEENHDLFTPLTKRISGSLDCKSSVTQGSVSSVGNKKQCPRMSKDDHRSLNYEELQAL DDFELANVVIFGNKTFRPLQHQACKATVAKQDCFVLMPTGGGKSLCYQLPATLKPGVTVVISPLLSLIQDQIITLNLKFGIPATFLNSQQTSAQAAAILQ ELRKDKPSCKLLYVTPERIAGNPAFLEILKCLHLKGQLAGFVVDEAHCVSQWGHDFRPDYKRLGCLKQNFPVVPVMALTATATHSVREDILKTLRIPRAL VLETSFDRPNLKYEVVGKTKESLKLLGDLLRDRFKNQCGIVYCLSKNECVEVSKFLNEKCKIKAVYYHAGLGARQRVDVQRKWHTGEVHIVCATIAFGMG IDKPDVRFVIHNTLSKSIESYYQESGRAGRDSHPATCIALYQKKDFSRVVCMLRSGQGYKRESFKPAMAQAQKMKSYCELKVECRRQVLLEHFGESFDQK ACKFGSNPCDNCLKTTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Potri.005G019800 [exp]	0	1
AT3G02820			zinc knuckle (CCHC-type) famil...		Potri.010G097400 [exp]	1.73	0.7734
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	6.16	0.7501
AT1G19980			cytomatrix protein-related (.1...		Potri.005G239500 [exp]	6.70	0.7139
AT1G80710		DRS1	DROUGHT SENSITIVE 1 (.1)		Potri.018G112500 [exp]	11.13	0.7358
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.017G078200 [exp]	11.87	0.7451
AT4G39380			unknown protein		Potri.007G077700 [exp]	11.95	0.7131
AT5G45330		DCP5-L	decapping 5-like (.1)		Potri.004G235100 [exp]	13.49	0.7044
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Potri.008G042400 [exp]	14.86	0.6976	ATS9.3
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Potri.001G470900 [exp]	16.97	0.7009
AT1G26340		B5 #6, B5#6, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.010G156900 [exp]	19.07	0.7044	B5.2

Compare expression of checked genes

Potri.005G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.