Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56310 656 / 0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT4G13870 79 / 7e-16 WRNEXO, ATWRNEXO, WEX, ATWEX Werner syndrome-like exonuclease (.1.2) AT5G24340 77 / 1e-14 3'-5' exonuclease domain-containing protein (.1) AT1G54440 44 / 0.0002 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1.2) AT5G35910 44 / 0.0003 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G009500 [exp] 79 / 2e-15 AT5G24340 679 / 0.0 3'-5' exonuclease domain-containing protein (.1) Potri.016G028700 [exp] 59 / 1e-09 AT4G13870 104 / 5e-27 Werner syndrome-like exonuclease (.1.2) Potri.017G059200 [exp] 57 / 2e-08 AT4G13870 288 / 4e-97 Werner syndrome-like exonuclease (.1.2) Potri.006G031400 [exp] 55 / 2e-08 AT3G12410 101 / 2e-26 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.013G062800 [exp] 49 / 9e-06 AT5G35910 791 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1) Potri.019G038701 [exp] 45 / 0.0002 AT5G35910 846 / 0.0 Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010930 [exp] 778 / 0 AT1G56310 640 / 0.0 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10031403 [exp] 377 / 4e-128 AT1G56310 305 / 2e-100 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10031402 [exp] 264 / 7e-85 AT1G56310 210 / 1e-64 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10031404 [exp] 101 / 7e-26 AT1G56310 87 / 9e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10022376 [exp] 87 / 1e-17 AT5G24340 544 / 0.0 3'-5' exonuclease domain-containing protein (.1) Lus10029478 [exp] 61 / 2e-10 AT5G48350 82 / 2e-19 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10039591 [exp] 57 / 4e-09 AT3G12410 86 / 1e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10013769 [exp] 55 / 3e-08 AT4G13870 105 / 4e-27 Werner syndrome-like exonuclease (.1.2) Lus10039164 [exp] 54 / 1e-07 AT4G13870 105 / 2e-27 Werner syndrome-like exonuclease (.1.2) Lus10029479 [exp] 49 / 2e-06 AT2G36110 87 / 4e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [poplar] [flax] RNase_H PF01612 [poplar] [flax] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Potri.005G020000.4 pacid=42803073 polypeptide=Potri.005G020000.4.p locus=Potri.005G020000 ID=Potri.005G020000.4.v4.1 annot-version=v4.1 ATGGGCATAGAGGAGGGAGTTGTGGAGTTACATGATGATAAAGGAAAAATTGATAAAAAATTAACCATAAGTGTTCATACGTTTTCTGATTTAACCTACA CTTCTCCAGTAGTATTCTTATACCTTCTGAAAGAATGTTATGCTCATGGTACATGCAAGGCAACAAATAAATTCAGAATTCTTCAGCAAAAGGTCTATCA CGCACTAGAGAATTCTCCCCAACCAGGGCCTGCTACTTTTGTTGTTTGGTGCCTCTATGTCCTGCCGATATTTGGATTACATTGTGAAGGTTTCAGCCAC TTGATTATATCTGCTCTTCGTCGCTTTTTAAATCTAGCTCCCATCTCAGAGGACACCTCGAAAGCAAAAGTTATAGCGGCCCGGTTATTTTTGGATATTG TGGGAGGCTTGGTTGACCATGATGAGAGGATAGTAGTGAAAATACTTGAAGTTTTTGATGTCAAGTTGGCAGATGTCGACGAAGCCTTATGCCAGTTGAA TGTCCAAGATGATTATAAGCCTGACACGGCAAAAACACTTGTTGAAGATTATATTTTTAAATTGATAGACTCCCAATCATATATGACAGCAGCCAGTTTA TTAGAACACTTTTCTATCCGCCACTCCGGACAGTCTTTTCTCGTCAAAATGATGCAGAACAAACAATCTAGAGCAGCTGAAAAGTGGGCAACATTTATGG GGAAATCAATGCTATGTGCTCTTGTTCAGGAGTATGCTGATCAGAATATGCTAAAGCAGGCTTACGAAACAATAAAGAAAAACGATTTGAAGCAGGAATT TCCTGATGTATATCATAAGTGCAAAGAAAGCTCATTGAAGAAGTTAGCAGAAAAGGCATTATGGGATCTTGCTGAGGCAAAGACGCATGGTGATAAACAA CTTCTTGAATATTTGGTTTACCTGGCAATGGAGGCTTGTTACTCGGAGAAAGTTGATGAGTTGTGTGAACGATACTCCCTTGAAGGTTTTCTGAATGTCA AGGAATCTGAGGGTAGTGTTCTGCAAAGCAAATACCTGCATCTTGATGAATTGGCTGTTGAAAATATTATTTGGGTTGATGAAGTTGATGGTTTATGTGC TGCAACTAGCCACATCGAGGGATGTAAAGTCGTTGGCCTTGATTGTGAATGGAAACCCAATTATGTAAAAGGCAGCAAACCAAACAAGGTTTCTATCATG CAAATTGCATCTGATAAGACGGTTTTCATCTTTGACTTGATAAAGTTATTTGAAGACATACCTGATATCTTAGACAACTGCCTATCCCGCATTTTGCAGT CTCCTAGAATTCTCAAACTTGGTTATAACTTCCAATGTGACATAAAGCAGCTAGCTCATTCATATGGAGAGTTGCGGTGTTTCAATAACTATGAGAAATT ATTGGACATTCAGAATGTATTCAAAGACGCTAGAGGTGGTTTGTCAGGACTTGCTGAGAAAATACTGGGAACTGGTTTGAACAAGACAAGACGAAACAGC AATTGGGAACTACGGCCTCTGAGTCACAACCAGCTAGAGTATGCTGCTCTTGACGCTGCTGTACTTGTTCACATATTTCATCATTTTCACAATCACTCTC AGTCTGCTGGTTTCCCAGACGGACACGACAAGATCGAGTGGAAGTCTCATATTGTTTCTCGCATGGATAACCCCAAGAAAGCAAAAAAGGAGTCTAAAAA TAAAAGAGAATTGGAAGATGATATCAACAAGCGTGGGCAATCAAATTAG
AA sequence Show only first row Show all	>Potri.005G020000.4 pacid=42803073 polypeptide=Potri.005G020000.4.p locus=Potri.005G020000 ID=Potri.005G020000.4.v4.1 annot-version=v4.1 MGIEEGVVELHDDKGKIDKKLTISVHTFSDLTYTSPVVFLYLLKECYAHGTCKATNKFRILQQKVYHALENSPQPGPATFVVWCLYVLPIFGLHCEGFSH LIISALRRFLNLAPISEDTSKAKVIAARLFLDIVGGLVDHDERIVVKILEVFDVKLADVDEALCQLNVQDDYKPDTAKTLVEDYIFKLIDSQSYMTAASL LEHFSIRHSGQSFLVKMMQNKQSRAAEKWATFMGKSMLCALVQEYADQNMLKQAYETIKKNDLKQEFPDVYHKCKESSLKKLAEKALWDLAEAKTHGDKQ LLEYLVYLAMEACYSEKVDELCERYSLEGFLNVKESEGSVLQSKYLHLDELAVENIIWVDEVDGLCAATSHIEGCKVVGLDCEWKPNYVKGSKPNKVSIM QIASDKTVFIFDLIKLFEDIPDILDNCLSRILQSPRILKLGYNFQCDIKQLAHSYGELRCFNNYEKLLDIQNVFKDARGGLSGLAEKILGTGLNKTRRNS NWELRPLSHNQLEYAALDAAVLVHIFHHFHNHSQSAGFPDGHDKIEWKSHIVSRMDNPKKAKKESKNKRELEDDINKRGQSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56310			Polynucleotidyl transferase, r...		Potri.005G020000 [exp]	0	1
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.001G303600 [exp]	3.46	0.9361
					Potri.003G063150 [exp]	4.00	0.9242
AT1G54050			HSP20-like chaperones superfam...		Potri.001G164200 [exp]	8.36	0.9101
AT1G15400			unknown protein		Potri.001G172100 [exp]	9.38	0.8504
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Potri.001G303000 [exp]	9.38	0.9226
AT4G27470		ATRMA3	RING membrane-anchor 3 (.1)		Potri.011G120800 [exp]	12.96	0.8926
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.001G389300 [exp]	13.19	0.7865
					Potri.007G126750 [exp]	16.91	0.8418
					Potri.004G234200 [exp]	17.94	0.8494
AT5G40250			RING/U-box superfamily protein...		Potri.001G351466 [exp]	26.00	0.8109

Compare expression of checked genes

Potri.005G020000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.