Plant FIBer expression Database

Potri.005G020100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G09195 570 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031400
[exp]
521 / 0 AT1G09195 444 / 5e-151 unknown protein
Lus10010931
[exp]
517 / 2e-180 AT1G09195 450 / 2e-153 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0237 HD_PDEase PF01966 HD HD domain
CL0108 Actin_ATPase PF02541 Ppx-GppA Ppx/GppA phosphatase family
Representative CDS sequence
>Potri.005G020100.2 pacid=42803471 polypeptide=Potri.005G020100.2.p locus=Potri.005G020100 ID=Potri.005G020100.2.v4.1 annot-version=v4.1
ATGACCCCATCAAATAATCTCTTTGCTTCAATAGACATGGGAACAAACTCCTTCAAAATGCTAATAATCCAGACAGACAAAACAGGAAAATTCCTTACTA
TTGATCGCCACAAAGACCCAGTCTGTCTTGGTCGTGACTTTTCTTCGTCAATCTCCAAAGAATCCCTTTTTAGAGCTGTAACTTGCCTTAAAAGATTCAA
TCAAGTACTCAAAGCCAACAAAATCTCCCCCCAACAGACAATATGTGTTGCCACTGCTACTGTACGTGAAGCAAGTAATGCTTTTGACTTCAAAAGATCA
GTTCTTGAATCAATTGGCTTTGAAGTTTCTGTTTTGTCTGGTGAAGAGGAGGCAAGGTTTGTTTATCTGGGTGTGCTTCAGTTTTTGCCAGTTTTTGATA
AAAGAGTTTTGGTGATTGATATTGGAGGTGGGTCTACTGAGTTTGTGATTGGGGAAAGAGGGAATGTTGTTTTTGGGGTGTCTTTGAAGTTGGGTCATGT
GGGTTTGACTCAAAAGTTTGGTAAAGATTGGAACTTGATGGAAATGAGAGAGTTTGTCAAGTTAGTTATTAAGGAATCTGAGTTGGTTGAGAAAGTTAAG
GATTTTGGTGGTTTTGAGGTTGTTGTTGGGACTTCGGGGACTATTAGAGCTATTGAAAGGGCTGTGTTCAGTGGTTATGGGAAAGAGTGTGTTGAGGGTA
ATGAGGTTTTTTTAAGGGATTGTAAGAGGGAGTGGAAGTTTAGTAGAGGGGAATTGAGTGGTGTTGTTGAGAGACTGTGTAGAGAAGGCGAGGAAGAGAG
GGTTAAGAGAGATGGTTTTTTCAAGAGGAGATCAGAGTTTATTGTTGCTGGTTCTGTGTTATTGGAGGAAATATTTGAGGCGGTTGGAATTGAGGAGATG
GAGGTTTCTGAGTATGCATTAGGAGAGGGTGTTATTGCTGAAACGTTGTCTAAGGTTTTTGAGGGTTATGATTTGAATGCGAATGCGAGGTGGCATTCTG
CTGTAAGGCTTGCAACAAGGTTTAGCGGGAAGAAAGGAATTAAATCTGCTGCACAATGTTCTAGCATTGCCAAGGAGATCTTTGAGGGCTTGAGAAAATG
GGGTGAGGTTGCTGGCAATCAAATCAATGTCTTCTTGGATGTAAAGGATCTTGAATGTCTTGAAGCTGCTTGTTTACTTCACAATATAGGGCTCATCACT
GGTAAAAAGGGTTACCACAGGCAGTCTTATCACATTATCACGAATGGAAATCATCTTCAAGGATACAGTGCTGAAGAAGTCAAGTTAATAGCGCTGCTTA
CAAGACATCACAGGAAGAAATTCCCTAAATTTGATGGAGGCTCATTACAAGAGTTTGCTGAAGAGTTAAAGCAGAAATTCAGAGTTCTTTGTGCAATCAT
ACGGTTATCAGTTGTATTGCAGCAGAGTGATGGTTTGAACTTCCAAGATATGGAATTTCTGCATTCTCAAGAAGGGTTCAAACTGATATTCAGGGAAGCA
GGGGCCATAGCTAGCTTTCCTCTGCCTGAAGACATGGGGAAAGAACTAAGAAATGAGTTGGAACACTTCAAAATTGTATTCCAGCAAAATTTATTGTTGG
AAGTGTTGCCAGAATAG
AA sequence
>Potri.005G020100.2 pacid=42803471 polypeptide=Potri.005G020100.2.p locus=Potri.005G020100 ID=Potri.005G020100.2.v4.1 annot-version=v4.1
MTPSNNLFASIDMGTNSFKMLIIQTDKTGKFLTIDRHKDPVCLGRDFSSSISKESLFRAVTCLKRFNQVLKANKISPQQTICVATATVREASNAFDFKRS
VLESIGFEVSVLSGEEEARFVYLGVLQFLPVFDKRVLVIDIGGGSTEFVIGERGNVVFGVSLKLGHVGLTQKFGKDWNLMEMREFVKLVIKESELVEKVK
DFGGFEVVVGTSGTIRAIERAVFSGYGKECVEGNEVFLRDCKREWKFSRGELSGVVERLCREGEEERVKRDGFFKRRSEFIVAGSVLLEEIFEAVGIEEM
EVSEYALGEGVIAETLSKVFEGYDLNANARWHSAVRLATRFSGKKGIKSAAQCSSIAKEIFEGLRKWGEVAGNQINVFLDVKDLECLEAACLLHNIGLIT
GKKGYHRQSYHIITNGNHLQGYSAEEVKLIALLTRHHRKKFPKFDGGSLQEFAEELKQKFRVLCAIIRLSVVLQQSDGLNFQDMEFLHSQEGFKLIFREA
GAIASFPLPEDMGKELRNELEHFKIVFQQNLLLEVLPE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G09195 unknown protein Potri.005G020100
[exp]
0 1
AT5G13020 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (... Potri.003G212300
[exp]
1.00 0.8083
AT3G24490 Trihelix Alcohol dehydrogenase transcri... Potri.003G056000
[exp]
2.00 0.8026
AT2G44430 DNA-binding bromodomain-contai... Potri.009G023100
[exp]
5.00 0.7678 BRD908
AT3G57910 D111/G-patch domain-containing... Potri.016G048600
[exp]
8.94 0.7490
AT1G65440 GTB1 global transcription factor gr... Potri.016G029200
[exp]
15.39 0.7811
AT5G04460 RING/U-box superfamily protein... Potri.008G030100
[exp]
17.74 0.7493
AT1G65440 GTB1 global transcription factor gr... Potri.006G031900
[exp]
18.00 0.7760
AT1G60200 splicing factor PWI domain-con... Potri.010G094700
[exp]
19.97 0.7524
AT5G13530 KEG KEEP ON GOING, protein kinases... Potri.001G274900
[exp]
20.34 0.7578
AT5G61140 U5 small nuclear ribonucleopro... Potri.015G056501
[exp]
22.44 0.7409

Potri.005G020100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.