Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ALPHA.10
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06720 880 / 0 IMPA1, IMPA-1, AIMPALPHA, ATKAPALPHA, AT-IMP importin alpha isoform 1 (.1.2) AT4G16143 870 / 0 IMPA-2 importin alpha isoform 2 (.1.2) AT1G02690 788 / 0 IMPA-6 importin alpha isoform 6 (.1.2) AT1G09270 777 / 0 IMPA-4 importin alpha isoform 4 (.1.2.3) AT4G02150 773 / 0 IMPA-3, MOS6, ATIMPALPHA3 MODIFIER OF SNC1, 6, IMPORTIN ALPHA ISOFORM 3, IMPORTIN ALPHA 3, ARM repeat superfamily protein (.1) AT5G49310 644 / 0 IMPA-5 importin alpha isoform 5 (.1) AT3G05720 598 / 0 IMPA-7 importin alpha isoform 7 (.1) AT5G52000 417 / 4e-142 IMPA-8 importin alpha isoform 8 (.1) AT1G32880 183 / 6e-55 ARM repeat superfamily protein (.1) AT5G03070 171 / 4e-47 IMPA-9 importin alpha isoform 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G010900 [exp] 1024 / 0 AT3G06720 869 / 0.0 importin alpha isoform 1 (.1.2) Potri.010G001400 [exp] 941 / 0 AT4G16143 849 / 0.0 importin alpha isoform 2 (.1.2) Potri.008G214100 [exp] 936 / 0 AT4G16143 881 / 0.0 importin alpha isoform 2 (.1.2) Potri.002G199600 [exp] 875 / 0 AT3G06720 858 / 0.0 importin alpha isoform 1 (.1.2) Potri.014G124200 [exp] 873 / 0 AT3G06720 868 / 0.0 importin alpha isoform 1 (.1.2) Potri.013G007300 [exp] 824 / 0 AT1G09270 877 / 0.0 importin alpha isoform 4 (.1.2.3) Potri.016G086600 [exp] 177 / 3e-49 AT5G03070 801 / 0.0 importin alpha isoform 9 (.1) Potri.005G210000 [exp] 56 / 4e-08 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 53 / 5e-07 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031398 [exp] 985 / 0 AT3G06720 925 / 0.0 importin alpha isoform 1 (.1.2) Lus10010933 [exp] 979 / 0 AT3G06720 922 / 0.0 importin alpha isoform 1 (.1.2) Lus10037722 [exp] 904 / 0 AT3G06720 884 / 0.0 importin alpha isoform 1 (.1.2) Lus10010028 [exp] 877 / 0 AT3G06720 862 / 0.0 importin alpha isoform 1 (.1.2) Lus10016850 [exp] 875 / 0 AT4G16143 858 / 0.0 importin alpha isoform 2 (.1.2) Lus10036330 [exp] 874 / 0 AT3G06720 874 / 0.0 importin alpha isoform 1 (.1.2) Lus10036452 [exp] 823 / 0 AT4G16143 825 / 0.0 importin alpha isoform 2 (.1.2) Lus10041124 [exp] 725 / 0 AT4G16143 733 / 0.0 importin alpha isoform 2 (.1.2) Lus10001480 [exp] 185 / 6e-52 AT5G03070 729 / 0.0 importin alpha isoform 9 (.1) Lus10008480 [exp] 178 / 1e-49 AT5G03070 738 / 0.0 importin alpha isoform 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0020 [poplar] [flax] TPR PF01749 [poplar] [flax] IBB Importin beta binding domain CL0020 [poplar] [flax] TPR PF16186 [poplar] [flax] Arm_3 Atypical Arm repeat
Representative CDS sequence Show only first row Show all	>Potri.005G020400.6 pacid=42803771 polypeptide=Potri.005G020400.6.p locus=Potri.005G020400 ID=Potri.005G020400.6.v4.1 annot-version=v4.1 ATGTCGTTGAGGCCGAGCGCTAGGACTGAGGTCCGCCGTAACAGGTACAAGGTGGCGGTGGATGCGGATGAGGGACGGCGGAGGAGAGAGGATAACATGG TGGAGATCCGTAAGAATCGGAGAGAAGAGAGTCTTCAAAAGAAGAGACGTGAAGGACTTCAGGCACAAGCCATCCCTGCTGCTCTTCACTCTTCCGCTGC TGAGAAAAAGCAGTTGGAACATCTGCCATCAATGGTTGCGGGTGTTTGGTCTGAAGATGGTAATCTGCAACTGGAGGCGACCACTCAGTTCAGGAAATTA CTTTCAATTGAGCGCAGCCCGCCTATAGAGGAAGTTATACAAGCTGGTGTCGTTCCTCGATTTGTTCAATTTCTTATGAGGGAGGATTTCCCACAACTGC AGTTCGAAGCTGCTTGGGCTCTCACAAACATTGCTTCTGGGACATCAGAGAACACCAAGGTGGTGATTGATCATGGAGCCGTCCCTATATTTGTACAACT TCTTGGTTCTCCAAGTGATGATGTTCGTGAGCAGGCTGTTTGGGCATTGGGAAATGTTGCTGGAGATTCTCCTAGATGCCGTGATCTTGTCCTTGGCCAT GGAGCTTTGCTTCCTTTGCTGGCACAATTAAACGAGAATGCCAAGCTTTCCATGCTCAGAAATGCTACATGGACGCTCTCAAACTTTTGTCGAGGCAAGC CACAACCTCCTTTTGATCAGGTTAAGCCTGCACTTCCAGCTCTTGCTCGCCTTATTCACTCTAACGATGAGGAAGTCTTAACTGATGCATGTTGGGCACT CTCATATCTCTCTGATGGTACGAATGACAAAATTCAAGCTGTCATTGAAGCAGGAGTATGTCCACGGCTAATTGAGCTTTTGCTGCATCCATCTCCTTCG GTCCTGATTCCTGCTCTTCGCACTGTTGGAAATATTGTCACTGGGGATGATATGCAGACACAGTGTATTATCAATCATCAATCACTGCCTTGCCTTTTGA ACTTGTTGACCAACAATTATAAGAAGAGCATCAAGAAGGAAGCTTGTTGGACCATCTCTAATATAACAGCTGGAAACAAAGAGCAGATCCAGGCTGTAAT TGAGGCTAATCTTATCGGTCCACTTGTACATCTGCTTCAAAATGCTGAGTTTGACATCAAGAAAGAGTCTGCATGGGCAATTTCAAACGCTACATCTGGT GGTACTCATGAACAAATCAAGTACCTTGTTAGCCAGGGTTGTATCAAGCCCTTATGTGACCTTCTCATTTGCCCTGATCCAAGGATTGTAACAGTCTGTT TAGAAGGCCTTGAAAACATCTTAAAGGTAGGAGAAGCCGACAAGAATGTGAGTGACACTGGAGGTGTAAATCTTTATGCTCAGATGATTGATGATGCTGA AGGATTAGAGAAAATTGAGAATCTACAGTCTCATGACAACTCAGAGATATATGAGAAGGCAGTGAAGATTCTCGAAACATATTGGTTGGAGGAGGATGAC GAGACAATGCCACCGGGTGATGCTTCCCAATCTGGGTTCCAATTTGGAGGCGATGCTCCTGCTGTTCCCTCTGGTGGATTTAACTTCGGCTAA
AA sequence Show only first row Show all	>Potri.005G020400.6 pacid=42803771 polypeptide=Potri.005G020400.6.p locus=Potri.005G020400 ID=Potri.005G020400.6.v4.1 annot-version=v4.1 MSLRPSARTEVRRNRYKVAVDADEGRRRREDNMVEIRKNRREESLQKKRREGLQAQAIPAALHSSAAEKKQLEHLPSMVAGVWSEDGNLQLEATTQFRKL LSIERSPPIEEVIQAGVVPRFVQFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVQLLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGH GALLPLLAQLNENAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLIELLLHPSPS VLIPALRTVGNIVTGDDMQTQCIINHQSLPCLLNLLTNNYKKSIKKEACWTISNITAGNKEQIQAVIEANLIGPLVHLLQNAEFDIKKESAWAISNATSG GTHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNVSDTGGVNLYAQMIDDAEGLEKIENLQSHDNSEIYEKAVKILETYWLEEDD ETMPPGDASQSGFQFGGDAPAVPSGGFNFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G06720		IMPA1, IMPA-1, ...	importin alpha isoform 1 (.1.2...		Potri.005G020400 [exp]	0	1	ALPHA.10
AT1G09780		iPGAM1	2,3-biphosphoglycerate-indepen...		Potri.016G142900 [exp]	2.00	0.8324	APGM.2
AT5G20120			unknown protein		Potri.018G066700 [exp]	6.24	0.7728
AT5G62580			ARM repeat superfamily protein...		Potri.012G074400 [exp]	15.32	0.7902
AT3G24040			Core-2/I-branching beta-1,6-N-...		Potri.001G053800 [exp]	16.00	0.8249
					Potri.001G400401 [exp]	17.32	0.7743
AT5G37475			Translation initiation factor ...		Potri.017G138300 [exp]	17.54	0.7327
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.001G366800 [exp]	19.26	0.7894
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.010G053700 [exp]	20.83	0.7615
AT3G09735			S1FA-like DNA-binding protein ...		Potri.006G130200 [exp]	25.45	0.7822	S1FA3.1
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.018G065900 [exp]	39.24	0.7790

Compare expression of checked genes

Potri.005G020400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.