Plant FIBer expression Database

Potri.005G020600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G26940 287 / 5e-96 DPD1 defective in pollen organelle DNA degradation1, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3.4)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031465
[exp]
341 / 8e-117 AT5G26940 259 / 5e-85 defective in pollen organelle DNA degradation1, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3.4)
Lus10015216
[exp]
333 / 7e-114 AT5G26940 251 / 6e-82 defective in pollen organelle DNA degradation1, Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2.3.4)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0219 RNase_H PF00929 RNase_T Exonuclease
Representative CDS sequence
>Potri.005G020600.1 pacid=42805176 polypeptide=Potri.005G020600.1.p locus=Potri.005G020600 ID=Potri.005G020600.1.v4.1 annot-version=v4.1
ATGAGTTGCATGAGGACAGTTCTAATGTGCTTCTCAATCTTGCAAGTTCCCAGATGCAGAACCCATACCTTAGCTAATTTTTGGTGGGAAAGCTCTCGTA
GTTTAAATAGAACATGTGGCAGGAATTCCAGCTTTCGATTGCTGGGTTCCAAAGCCAATGGGATGGAAGGAGGGTACAGTAAAAGATGGATCAGAAGACC
TGTAAGTACCAAAACAGGAGGAGAAAGCCAAACTACTCGAAAAAGCAAATCAACCACCATTGGACATGAAATTCTGGACGAAACAGTTTCAACTAGGTCT
ACATTGAATATAAAAAAAACAGAAGTAAGTGATTTCCATAGAAATCAATACTGTGATATTCAACAAAAGATTGCTGAGAACGAAGACATTGCTAAGCTTG
TGACTGTTATTGTCTTTGATATTGAGACTACTGGGTTCAGCAGACAGAATGAACGCATTATTGAGATTGCATTGCAGGATCTTCAGGGAGGTGAAAACAG
CACCTTCCAAACACTAGTAAATCCCGGACGCCATGTTACTAATTCAGATATTCATCACATTACAACACATATGGTCTGCAGACCTGATGTCCCAAGGATG
GAAGAGTTGATACCTATATTACTGCAGTATGTGAAGAGCCGTCAGAAACCTGGGGGCTATGTAATGTTTGTTGCTCACAATGCTCGTAATTTTGATGTCC
CATTTTTGGTTAATGAATTTGGTCGCCACCATTTTGAAATTCCTCAGAATTGGCTTTTCGTCGACACGCGTCCTCTGGCACGTGAAGTGCTGAAGATGGA
AGGATTAAAAGTTACTTCAGGGACATCACTAGAAGCCCTTTGCAAGAAGTATAATATTCAATTCGTTGGCAAAGCACACAGAGCCATGGCTGACGTGACC
GCATTATCATTAGTTCTTCAGAGGCTGACCTTCGACCTGAAACTCCCACTTTCTGGCCTCATTGCAAAACATTTTACACCTTCAGAATTAACCTCTGCAA
AGAAGAAGAAATAG
AA sequence
>Potri.005G020600.1 pacid=42805176 polypeptide=Potri.005G020600.1.p locus=Potri.005G020600 ID=Potri.005G020600.1.v4.1 annot-version=v4.1
MSCMRTVLMCFSILQVPRCRTHTLANFWWESSRSLNRTCGRNSSFRLLGSKANGMEGGYSKRWIRRPVSTKTGGESQTTRKSKSTTIGHEILDETVSTRS
TLNIKKTEVSDFHRNQYCDIQQKIAENEDIAKLVTVIVFDIETTGFSRQNERIIEIALQDLQGGENSTFQTLVNPGRHVTNSDIHHITTHMVCRPDVPRM
EELIPILLQYVKSRQKPGGYVMFVAHNARNFDVPFLVNEFGRHHFEIPQNWLFVDTRPLAREVLKMEGLKVTSGTSLEALCKKYNIQFVGKAHRAMADVT
ALSLVLQRLTFDLKLPLSGLIAKHFTPSELTSAKKKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G26940 DPD1 defective in pollen organelle ... Potri.005G020600
[exp]
0 1
AT1G05675 UDP-Glycosyltransferase superf... Potri.017G032300
[exp]
3.74 0.9468
AT1G77930 Chaperone DnaJ-domain superfam... Potri.002G090600
[exp]
5.09 0.9282
AT3G10420 SPD1 SEEDLING PLASTID DEVELOPMENT 1... Potri.010G228600
[exp]
7.74 0.9260
AT5G22510 INV-E, At-A/N-I... Arabidopsis alkaline/neutral i... Potri.010G236100
[exp]
8.30 0.9274
AT5G09300 Thiamin diphosphate-binding fo... Potri.005G185400
[exp]
11.40 0.9214
AT4G03230 S-locus lectin protein kinase ... Potri.001G441040
[exp]
12.96 0.9190
AT1G13680 PLC-like phosphodiesterases su... Potri.011G144900
[exp]
12.96 0.9267
AT5G19540 unknown protein Potri.018G080900
[exp]
14.31 0.8903
AT1G13990 unknown protein Potri.010G164400
[exp]
15.42 0.9112
AT5G38260 Protein kinase superfamily pro... Potri.007G125450
[exp]
15.87 0.9252

Potri.005G020600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.