Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SYP41.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05710 448 / 2e-159 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT5G26980 446 / 1e-158 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2) AT4G02195 379 / 5e-132 ATTLG2B, ATSYP42, SYP42 syntaxin of plants 42 (.1) AT5G46860 48 / 3e-06 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT5G16830 44 / 6e-05 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011100 [exp] 527 / 0 AT3G05710 457 / 7e-163 syntaxin of plants 43 (.1.2) Potri.002G200400 [exp] 399 / 3e-140 AT5G26980 397 / 1e-139 syntaxin of plants 41 (.1.2) Potri.001G138500 [exp] 48 / 3e-06 AT5G46860 377 / 3e-133 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.003G095300 [exp] 48 / 4e-06 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.014G145200 [exp] 44 / 5e-05 AT5G46860 263 / 4e-88 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.016G068600 [exp] 42 / 0.0005 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.006G202200 [exp] 41 / 0.0008 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.019G036700 [exp] 41 / 0.0009 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029864 [exp] 484 / 1e-173 AT3G05710 510 / 0.0 syntaxin of plants 43 (.1.2) Lus10031466 [exp] 476 / 4e-170 AT3G05710 506 / 0.0 syntaxin of plants 43 (.1.2) Lus10020683 [exp] 384 / 1e-134 AT3G05710 361 / 7e-126 syntaxin of plants 43 (.1.2) Lus10015215 [exp] 213 / 2e-68 AT3G05710 223 / 3e-72 syntaxin of plants 43 (.1.2) Lus10000311 [exp] 54 / 8e-09 AT5G46860 217 / 5e-72 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10030953 [exp] 52 / 2e-07 AT5G46860 417 / 9e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10040094 [exp] 52 / 2e-07 AT5G46860 419 / 1e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10011064 [exp] 52 / 6e-07 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10013589 [exp] 42 / 0.0006 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10021263 [exp] 41 / 0.0008 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [poplar] [flax] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Potri.005G020800.1 pacid=42804824 polypeptide=Potri.005G020800.1.p locus=Potri.005G020800 ID=Potri.005G020800.1.v4.1 annot-version=v4.1 ATGGCAACGAGGAATCGGACGTTGATATTTAGGAAGTACAGAGATGCATTAAAGAGCGTTAGGGTTCCGTCGAGCTTATCGCCCTCGACAAGCTCCAGCG GAGGTGGTGGTGGCGGTCCGGTGATCGAATTGGCTAGCACCTCGCTTCTAAATCCTAATCGGAAATATACTCCTCTTAGTACTGAAGATCCCGGTAATTC AAGTAAAGGTGCACTTACAGTAGGTTTGCCACCAGCTTGGGTGGATGTATCTGAAGAAATATCGTCAAATGTGCAACGTGCACGTATGAAAATGGTTGAG CTAGCAAAGGCTCATGCCAAAGCATTGATGCCTTCATTTGGTGATGGTAAAGAAGATCAACGCATGATTGAGGGTCTAACCCAAGAGATAACTGGTCTTA TAAGGAAATCAGAGAAGAAACTGCAAAGACTTGCTGCAGCTGGGCCTTCTGAGGATTCAAACATTAGAAAAAATGTGCAGCGTTCCCTTGCTACTGACCT TCAGAACCTTTCAATGGAACTTCGCAAGAAACAGTCAACATACTTGCAGCGCCTCAGGCAACAAAAAGAGGGCCAGGACGGGGTTGATTTAGAAATGAAC CTAAATGGCGGTAGATCTATTATAGATGATGACAATTTGGATGACATGGTTTTTAATGAGCATCAGATGGCCAAGATGAAAAGGAGTGAAGCATTCACTG TAGAAAGGGAAAGAGAGATCCAACAGGTAGTTGAATCAGTAAACGAGCTTGCTCAAATTATGAAGGACTTGTCAGTACTAGTAATAGACCAGGGCACTAT TGTTGATAGGATAGACTACAACATTCAGAATGCAGCAACCACAGTTGAGGAGGGGCTTAAGCAACTGCAGAAGGCTGAGAGGACTCAGAAACGAGGGGGA ATGGTGATGTGTGCCACAGTGCTCGTTATCATGTGCTTCATCATGTTGGTCCTCCTTGTCCTCAAGACGATTGTCTTTTGA
AA sequence Show only first row Show all	>Potri.005G020800.1 pacid=42804824 polypeptide=Potri.005G020800.1.p locus=Potri.005G020800 ID=Potri.005G020800.1.v4.1 annot-version=v4.1 MATRNRTLIFRKYRDALKSVRVPSSLSPSTSSSGGGGGGPVIELASTSLLNPNRKYTPLSTEDPGNSSKGALTVGLPPAWVDVSEEISSNVQRARMKMVE LAKAHAKALMPSFGDGKEDQRMIEGLTQEITGLIRKSEKKLQRLAAAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLQRLRQQKEGQDGVDLEMN LNGGRSIIDDDNLDDMVFNEHQMAKMKRSEAFTVEREREIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQNAATTVEEGLKQLQKAERTQKRGG MVMCATVLVIMCFIMLVLLVLKTIVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05710		ATSYP43, SYP43	syntaxin of plants 43 (.1.2)		Potri.005G020800 [exp]	0	1	SYP41.1
AT5G61460		SMC6B, ATRAD18,...	STRUCTURAL MAINTENANCE OF CHRO...		Potri.003G107700 [exp]	8.48	0.7390
					Potri.015G116750 [exp]	16.12	0.6807
AT5G45730			Cysteine/Histidine-rich C1 dom...		Potri.016G044432 [exp]	18.00	0.7049
AT3G57600	AP2_ERF	DREB2F	Integrase-type DNA-binding sup...		Potri.006G054500 [exp]	44.36	0.6783	Pt-DREB2.1
AT1G16970		KU70, ATKU70	ARABIDOPSIS THALIANA KU70 HOMO...		Potri.011G107400 [exp]	47.47	0.6798	Pt-KU70.1
AT1G69220		SIK1	Protein kinase superfamily pro...		Potri.010G157400 [exp]	135.58	0.6220	SIK1.1

Compare expression of checked genes

Potri.005G020800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.