Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05670 436 / 3e-140 RING/U-box protein (.1) AT4G10940 64 / 3e-11 RING/U-box protein (.1) AT2G39100 50 / 3e-06 RING/U-box superfamily protein (.1) AT1G72200 48 / 2e-05 RING/U-box superfamily protein (.1) AT1G67180 47 / 6e-05 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT5G53910 44 / 0.0002 RING/U-box superfamily protein (.1) AT5G17600 44 / 0.0003 RING/U-box superfamily protein (.1) AT4G11680 44 / 0.0003 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G26350 44 / 0.0004 PEX10, ATPEX10 peroxin 10 (.1) AT2G01735 43 / 0.0007 RIE1 RING-finger protein for embryogenesis (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G011400 [exp] 1005 / 0 AT3G05670 417 / 7e-133 RING/U-box protein (.1) Potri.001G089900 [exp] 63 / 6e-10 AT4G10930 506 / 5e-160 unknown protein Potri.016G058300 [exp] 49 / 8e-06 AT3G58030 331 / 7e-110 RING/U-box superfamily protein (.1.2.3.4) Potri.006G193600 [exp] 48 / 3e-05 AT3G58030 389 / 2e-132 RING/U-box superfamily protein (.1.2.3.4) Potri.005G035600 [exp] 47 / 4e-05 AT3G05250 308 / 7e-106 RING/U-box superfamily protein (.1) Potri.003G139900 [exp] 47 / 4e-05 AT5G53110 253 / 3e-81 RING/U-box superfamily protein (.1) Potri.008G215200 [exp] 47 / 4e-05 AT2G39100 248 / 1e-81 RING/U-box superfamily protein (.1) Potri.004G106000 [exp] 46 / 9e-05 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Potri.001G091700 [exp] 45 / 0.0002 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015213 [exp] 416 / 7e-132 AT3G05670 368 / 2e-112 RING/U-box protein (.1) Lus10031468 [exp] 386 / 8e-125 AT3G05670 343 / 2e-107 RING/U-box protein (.1) Lus10000086 [exp] 192 / 5e-54 AT3G05670 162 / 9e-44 RING/U-box protein (.1) Lus10013501 [exp] 87 / 1e-17 AT3G05670 118 / 1e-27 RING/U-box protein (.1) Lus10007973 [exp] 57 / 1e-09 AT3G05670 51 / 2e-08 RING/U-box protein (.1) Lus10032402 [exp] 61 / 3e-09 AT4G10930 553 / 3e-179 unknown protein Lus10023068 [exp] 61 / 3e-09 AT4G10930 586 / 0.0 unknown protein Lus10001535 [exp] 58 / 1e-08 AT4G10940 189 / 4e-59 RING/U-box protein (.1) Lus10034165 [exp] 52 / 1e-06 AT2G39100 199 / 6e-62 RING/U-box superfamily protein (.1) Lus10004467 [exp] 49 / 1e-05 AT3G05250 288 / 9e-98 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.005G021000.3 pacid=42804793 polypeptide=Potri.005G021000.3.p locus=Potri.005G021000 ID=Potri.005G021000.3.v4.1 annot-version=v4.1 ATGGGAAGGGGGCAAAAGGTTAATTGTAAGAGGAATCCCAAGAAAAGGGTCAGGGATAAAGATTCCGATGATTCGGATGAGGATTATGTATTGGAGAATG AGGAAAATGTATCGGATGATGATTCAGAGGATTGTCGAATTTCTCTAGATGGGTATGCATCAGAGGAGAGTTTTGATAGTTTTGTTGAGGAGGAGGAGGA GGAGGAGTTCAGGAAGCCTGTTAGATCGAGGAAGAAAAGTGGTTCTTTAGGGGATGGGAAAGTTGAGGGTAAAACTTCTCAGAAGAGAAAAAGGGTATCT TATGATGACGAGGATGAGGAATATATTAATGATGATGAGGGCGAAACCGATGAAGAATTCACACCAGATGAAGATGATGATGATTGCTTGGATGAGGATG AAGAATTGACAGTGAAAAGGAAGAGCAGGAATGTGAAAGTGATCAAGAGGAGAGTGCCGAAAAGGGGTTCTGGAAGACGTAGAAAAAGGATTAGAAAATC CAGGGTTTTGAAGAAGCCTTTGGCAAAGAAAGGAAGAAACAAACGTAAGTTGAAGAAGAAAGAGAGATGTGAATATGATGATGAGGATGATGGTGACTTT TTAGCAGATAGCTCAATTGTGAGAGAAAAGAGCAAGAAACATTCAGGTGTGAGAAAGAGGAAATTTGCTGTAAATTCGGATTCAGATTTTTTGTCTAATG GATCATCTGATTATGACTATACCATTTCTGAGGAAGAGAGGGAGCTGGTGAGGGAAGCCAATCAGTTTGGAGAATTGAAGACAAGTTTGAGAAGCTCATC AGCTGGGAAGAGATTTCAGGAGAATGGGGATTTGTGCGAGCAGACAAAACCACTAGGAAGAAAAGGTAAGGAAAAGGTAGATGAAGTAAAGTCAGAGCTA GGAAGGCAGGTGTGTGGAATTTGTCTTTCTGAAGAGGACAAAAGAAGATTCAGGGGAACACTGGACTGCTGCAGTCACTATTTCTGTTTCACTTGCATCA TGGAGTGGTCAAAAGTAGAATCCCGTTGCCCTTTGTGCAAGCAAAGATTTAGAACAATAACCAAGAATGGAAGATCAATAGTGGGAGTTGATCTGAGAAA TATGGTGATACAAGTTCCCAAGCGTGATCAGGTCTATCAACCAACTGAGGAAGAAATCAGGAGCTACATTGATCCATATGAGAACGTGATTTGTAAAGAA TGCCACGAAGGTGGGGATGATGGCCTCATGCTACTATGTGATCTCTGTGATTCATCTGCACATACCTATTGTGTTGGTTTGGGGCGGCAAGTACCTGAAG GCAATTGGTACTGTGATGATTGTAGACCTGTTGCTCTTGGATCCTCAAGTTCCCAAACTCAAGATTCCTTGCCTGATCAATGGAATATAAGCAGCAACAT ATTTAATAGACCATCGCTCATGTTGAATTTAGAAGAAGGTTTAGATCCCAATCTAGAGTCTTCACCTCGATTGACGGTCCCACAAGCATTTGGGAGTCTG TCATCTCCGAGATTTCCAACTGGAGATAATCATGTAGCTTCTCCAGTGTCTGGAGCAGGGGCATCAACTCTCTCTGGGAGACGTCATATACACCGTAATA TACGGATTCTCCTTTCAAATATGAATCCCTCAACAAATATGAATCCCATGGCAAATAGAATTGATGTCATCTCAGCTGCCAGCTTGCGTGGTGATCTTTC AAACTCGCAAATTGATCTGGGTAGGGAAACAGCTCTTCAAAATTTAAGGACACAAGAAGTTGACACATTAGAACAGACACATCACGAGGAGAGATTGCAG ACTAATGACCATCAGCCGTCTTCATTTCAAAATAGGGATTCTTTTTATCTGACGCCAAACCAATTGACAAGGCAAATAGTTCAGGGTCCAACTATTCCAA CTTCTGACAGACCCGTCAATTTGACATTATGGCCTGAACTCATGGGGATCAACTCAATGTCTGGTTCTGAACAACTGCATGAGTTTGACAGCAGAGCAAT GACCGGGCATGGTGGTACTTTGTCCTCGTACCAAGTTAGAGGAGAAAGCCAATTCTATGATGTGAAGGAAAAATTGCAATCAATGGTCAAAAACCATTTG GGAAGCTTGTCACATGATACTGAATTAGACCATGATACTTTCAAGGATATATCAAGGAGTTCTACACATACCATATTAGCTGCTTGTGGGCTAGAGCACA AGAGGAGTGAAGTTCATACAGTGCCCCCACCATCAACTTGTATACATATCGATAGAGTGGTCGCTGGGCAGACAAGCCCGATGAAAGGTTGTTGCTCATC TTGTTTTGACTCTTTTGTAAGGGACGTAGTGAAAAGGATCATGGACAAGAGACCACGACAGTGGTTGACTTTAGGTCTTTAG
AA sequence Show only first row Show all	>Potri.005G021000.3 pacid=42804793 polypeptide=Potri.005G021000.3.p locus=Potri.005G021000 ID=Potri.005G021000.3.v4.1 annot-version=v4.1 MGRGQKVNCKRNPKKRVRDKDSDDSDEDYVLENEENVSDDDSEDCRISLDGYASEESFDSFVEEEEEEEFRKPVRSRKKSGSLGDGKVEGKTSQKRKRVS YDDEDEEYINDDEGETDEEFTPDEDDDDCLDEDEELTVKRKSRNVKVIKRRVPKRGSGRRRKRIRKSRVLKKPLAKKGRNKRKLKKKERCEYDDEDDGDF LADSSIVREKSKKHSGVRKRKFAVNSDSDFLSNGSSDYDYTISEEERELVREANQFGELKTSLRSSSAGKRFQENGDLCEQTKPLGRKGKEKVDEVKSEL GRQVCGICLSEEDKRRFRGTLDCCSHYFCFTCIMEWSKVESRCPLCKQRFRTITKNGRSIVGVDLRNMVIQVPKRDQVYQPTEEEIRSYIDPYENVICKE CHEGGDDGLMLLCDLCDSSAHTYCVGLGRQVPEGNWYCDDCRPVALGSSSSQTQDSLPDQWNISSNIFNRPSLMLNLEEGLDPNLESSPRLTVPQAFGSL SSPRFPTGDNHVASPVSGAGASTLSGRRHIHRNIRILLSNMNPSTNMNPMANRIDVISAASLRGDLSNSQIDLGRETALQNLRTQEVDTLEQTHHEERLQ TNDHQPSSFQNRDSFYLTPNQLTRQIVQGPTIPTSDRPVNLTLWPELMGINSMSGSEQLHEFDSRAMTGHGGTLSSYQVRGESQFYDVKEKLQSMVKNHL GSLSHDTELDHDTFKDISRSSTHTILAACGLEHKRSEVHTVPPPSTCIHIDRVVAGQTSPMKGCCSSCFDSFVRDVVKRIMDKRPRQWLTLGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05670			RING/U-box protein (.1)		Potri.005G021000 [exp]	0	1
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Potri.004G201900 [exp]	2.23	0.8379
AT5G53930			unknown protein		Potri.011G115900 [exp]	2.23	0.8482
AT2G26850			F-box family protein (.1)		Potri.006G040000 [exp]	3.74	0.7906
AT1G15280			CASC3/Barentsz eIF4AIII bindin...		Potri.003G056500 [exp]	6.00	0.8284
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.001G253400 [exp]	6.78	0.8453
AT2G25730			unknown protein		Potri.006G244900 [exp]	7.74	0.8421
AT5G04460			RING/U-box superfamily protein...		Potri.010G231100 [exp]	9.16	0.7788
AT1G04300			TRAF-like superfamily protein ...		Potri.008G163300 [exp]	10.19	0.8229
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.005G131200 [exp]	12.84	0.7662	XLG.1
AT2G16940			Splicing factor, CC1-like (.1....		Potri.009G137200 [exp]	21.21	0.8173

Compare expression of checked genes

Potri.005G021000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.